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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:93.7 nTPM
HPA:93.7 nTPM
GTEx:85.4 nTPM
FANTOM5:300.8 Scaled Tags Per Million
Pig:71.8 nTPM
Mouse:145.6 nTPM
Allen mouse:9.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA044980
Glial cells Not detected
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 93.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 68.6
1857 Female, age 85, left hemisphere 86.1
1854 Male, age 80, left hemisphere 73.5
1781 Male, age 74, unknown 69.2
2288 Male, age 75, left hemisphere 67.2
2290 Female, age 72, unknown 66.9
2846 Female, age 79, unknown 64.2
2481 Female, age 94, left hemisphere 62.3
2289 Male, age 61, right hemisphere 59.1
Claustrum
nTPM: 71.1
2198 Male, age 80, both hemispheres 78.7
2491 Male, age 75, both hemispheres 76.6
2568 Male, age 61, both hemispheres 73.5
2284 Female, age 91, both hemispheres 72.7
2196 Female, age 79, unknown 71.6
2645 Female, age 72, unknown 71.3
1956 Male, age 74, unknown 69.5
2392 Female, age 94, both hemispheres 68.1
2292 Female, age 85, both hemispheres 58.2
Globus pallidus, externus
nTPM: 57.5
2646 Male, age 61, right hemisphere 61.0
2772 Female, age 79, unknown 61.0
2395 Male, age 75, both hemispheres 58.4
2567 Female, age 72, unknown 54.7
1996 Male, age 80, right hemisphere 52.5
Globus pallidus, internus
nTPM: 53.1
2483 Female, age 94, right hemisphere 67.7
2287 Male, age 75, right hemisphere 66.6
2778 Female, age 91, both hemispheres 51.8
2566 Female, age 72, unknown 51.7
1818 Male, age 74, unknown 48.9
2037 Male, age 80, right hemisphere 43.1
2111 Female, age 85, right hemisphere 42.2
Nucleus accumbens
nTPM: 75.4
1856 Female, age 91, right hemisphere 106.8
1806 Female, age 85, left hemisphere 89.2
1783 Male, age 74, unknown 79.7
2824 Male, age 61, right hemisphere 76.3
2698 Female, age 72, unknown 68.3
2732 Male, age 80, right hemisphere 66.9
2286 Male, age 75, left hemisphere 65.6
2391 Female, age 94, left hemisphere 50.1
Nucleus basalis of Meynert
nTPM: 59.7
2484 Female, age 94, left hemisphere 63.8
2569 Male, age 61, both hemispheres 63.2
2393 Male, age 80, right hemisphere 57.3
2821 Male, age 75, both hemispheres 54.4
Nucleus of the diagonal band
nTPM: 93.7
2775 Male, age 80, right hemisphere 105.2
1812 Female, age 91, both hemispheres 96.3
2195 Female, age 85, both hemispheres 93.3
1979 Male, age 74, unknown 91.6
2029 Male, age 61, right hemisphere 82.1
Olfactory tubercle
nTPM: 84.7
1846 Male, age 80, right hemisphere 91.0
1998 Female, age 91, both hemispheres 89.5
2487 Female, age 94, left hemisphere 88.0
2856 Male, age 75, right hemisphere 70.5
Putamen
nTPM: 65.4
1937 Female, age 91, right hemisphere 80.9
1838 Male, age 80, right hemisphere 79.5
2647 Male, age 75, left hemisphere 68.2
2466 Female, age 79, unknown 63.3
2482 Female, age 94, left hemisphere 56.2
1829 Male, age 74, unknown 55.3
2489 Female, age 72, unknown 54.1
Septal nuclei
nTPM: 83.5
1960 Male, age 74, unknown 115.8
2031 Female, age 72, unknown 99.8
2009 Female, age 91, both hemispheres 85.3
2059 Female, age 85, both hemispheres 82.5
2629 Female, age 94, right hemisphere 76.7
2394 Male, age 61, left hemisphere 64.5
2199 Male, age 80, right hemisphere 60.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 85.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 69.5
Samples: 246

Max nTPM: 99.5
Min nTPM: 42.2
Std nTPM: 8.3
Median nTPM: 69.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 99.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 91.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 90.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 89.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 88.0
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 87.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 87.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 86.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 86.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 86.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 86.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 85.4
Samples: 246

Max nTPM: 132.3
Min nTPM: 42.5
Std nTPM: 17.5
Median nTPM: 86.0
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 132.3
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 129.9
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 128.0
GTEX-13RTJ-0011-R6a-SM-5SI74 60-69 years, male 126.2
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 124.3
GTEX-13X6K-0011-R6a-SM-5P9K6 60-69 years, female 123.2
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 122.0
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 121.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 119.7
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 119.5
GTEX-NPJ7-0011-R6a-SM-2I3G7 60-69 years, female 116.7
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Brain - Putamen (basal ganglia)
Average nTPM: 65.1
Samples: 205

Max nTPM: 91.8
Min nTPM: 48.8
Std nTPM: 7.5
Median nTPM: 64.7
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 91.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 82.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 81.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 80.7
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 80.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 80.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 80.2
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 80.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 78.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 78.8
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 78.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 300.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 206.4
FF:10164-103B2 76 years, female 206.4
Globus pallidus
Scaled Tags Per Million: 127.0
FF:10161-103A8 76 years, female 135.6
FF:10175-103C4 60 years, female 118.4
Nucleus accumbens
Scaled Tags Per Million: 273.8
FF:10037-101F1 23-56 years, mixed 273.8
Putamen
Scaled Tags Per Million: 300.8
FF:10176-103C5 60 years, female 300.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 71.8
Pig sample Sample description nTPM
Caudate
nTPM: 71.8
Samples: 4

Max nTPM: 81.3
Min nTPM: 60.6
Sample A Female 60.6
Sample B Female 78.1
Sample C Male 81.3
Sample D Male 67.1
Putamen
nTPM: 58.6
Samples: 4

Max nTPM: 71.5
Min nTPM: 40.8
Sample A Female 40.8
Sample B Female 54.6
Sample C Male 67.4
Sample D Male 71.5
Septum
nTPM: 55.2
Samples: 4

Max nTPM: 70.7
Min nTPM: 38.9
Sample A Female 70.7
Sample B Female 59.2
Sample C Male 51.9
Sample D Male 38.9
Ventral pallidum
nTPM: 58.7
Samples: 4

Max nTPM: 67.7
Min nTPM: 52.3
Sample A Female 67.7
Sample B Female 52.3
Sample C Male 58.3
Sample D Male 56.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 145.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 122.2
Samples: 4

Max nTPM: 131.7
Min nTPM: 115.5
Sample A Male 120.5
Sample B Male 121.2
Sample C Female 115.5
Sample D Female 131.7
Septum
nTPM: 145.7
Samples: 4

Max nTPM: 154.3
Min nTPM: 134.7
Sample A Male 140.5
Sample B Male 154.3
Sample C Female 134.7
Sample D Female 153.1
Ventral forebrain
nTPM: 115.8
Samples: 4

Max nTPM: 121.5
Min nTPM: 111.1
Sample A Male 111.1
Sample B Male 121.5
Sample C Female 112.2
Sample D Female 118.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 9.5
70194624 Antisense, RP_050517_01_G05, Mouse strain C57BL/6J (56 days, male) 9.9
74957911 Antisense, RP_060315_05_A08, Mouse strain C57BL/6J (56 days, male) 9.1
Pallidum
Expression energy: 9.4
70194624 Antisense, RP_050517_01_G05, Mouse strain C57BL/6J (56 days, male) 9.7
74957911 Antisense, RP_060315_05_A08, Mouse strain C57BL/6J (56 days, male) 9.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.