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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.2 nTPM
HPA:33.2 nTPM
GTEx:19.0 nTPM
FANTOM5:26.8 Scaled Tags Per Million
Pig:22.2 nTPM
Mouse:10.4 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.9
2586 Male, age 75, left hemisphere 39.1
1833 Male, age 53, unknown 31.5
2828 Female, age 72, unknown 31.4
1870 Female, age 42, unknown 31.3
2666 Male, age 74, left hemisphere 30.8
2411 Female, age 72, unknown 30.6
1827 Male, age 72, unknown 30.1
1830 Male, age 51, unknown 29.6
2219 Male, age 76, both hemispheres 27.8
2019 Male, age 18, unknown 26.9
Dorsal raphe nucleus
nTPM: 31.8
1828 Male, age 53, unknown 33.2
2047 Male, age 72, unknown 32.6
2016 Female, age 72, unknown 32.5
2298 Female, age 72, unknown 31.9
2750 Male, age 76, both hemispheres 28.6
Inferior colliculus
nTPM: 33.2
2097 Female, age 72, unknown 34.8
1848 Female, age 42, unknown 33.2
1890 Male, age 53, unknown 32.7
2849 Male, age 72, unknown 31.9
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Pedunculopontine tegmental nucleus
nTPM: 27.8
1921 Female, age 85, both hemispheres 29.8
2334 Male, age 80, both hemispheres 29.0
2338 Male, age 61, both hemispheres 24.7
Periaquaductal grey, anterior
nTPM: 31.6
2502 Female, age 75, unknown 32.2
1947 Male, age 18, unknown 32.0
1795 Male, age 51, unknown 30.8
Periaquaductal grey, dorsal
nTPM: 31.6
2464 Female, age 72, unknown 34.6
1840 Male, age 53, unknown 31.4
2850 Male, age 76, both hemispheres 31.0
1831 Male, age 72, unknown 29.5
Periaquaductal grey, lateral
nTPM: 30.2
2053 Male, age 18, unknown 32.7
2140 Male, age 76, both hemispheres 30.6
2272 Male, age 74, both hemispheres 27.5
Pretectal area
nTPM: 29.0
2825 Male, age 18, unknown 32.6
2667 Female, age 75, unknown 30.0
2224 Female, age 72, unknown 29.9
1944 Female, age 72, unknown 29.4
2316 Male, age 76, right hemisphere 29.0
1816 Male, age 51, unknown 28.7
1817 Female, age 42, unknown 28.7
1815 Male, age 53, unknown 28.6
2273 Male, age 74, both hemispheres 28.1
2407 Male, age 75, both hemispheres 27.4
2007 Male, age 72, unknown 27.2
Red nucleus
nTPM: 31.7
1954 Female, age 42, unknown 34.5
1821 Female, age 72, unknown 33.3
2227 Male, age 72, unknown 33.2
2769 Male, age 72, unknown 33.2
2503 Female, age 72, unknown 32.8
1865 Male, age 51, unknown 31.8
1904 Male, age 53, unknown 31.7
2588 Male, age 74, left hemisphere 31.7
2725 Female, age 75, unknown 31.1
2823 Male, age 76, right hemisphere 30.8
2584 Male, age 75, left hemisphere 28.8
2785 Male, age 18, unknown 28.0
Substantia nigra
nTPM: 29.4
2699 Male, age 18, unknown 32.0
2583 Male, age 75, right hemisphere 31.0
1851 Male, age 51, unknown 30.1
1889 Female, age 72, unknown 29.7
1916 Female, age 42, unknown 29.7
2241 Male, age 72, unknown 29.4
2409 Female, age 72, unknown 28.8
1941 Male, age 53, unknown 28.4
2590 Female, age 75, unknown 27.9
2665 Male, age 74, both hemispheres 26.9
Superior colliculus
nTPM: 30.3
1995 Male, age 72, unknown 32.4
1913 Female, age 42, unknown 31.0
2664 Male, age 75, both hemispheres 30.8
2668 Female, age 75, unknown 30.7
1839 Male, age 51, unknown 30.5
1796 Male, age 53, unknown 30.1
2087 Female, age 72, unknown 29.6
2261 Male, age 18, unknown 29.5
2587 Male, age 74, left hemisphere 29.1
1895 Male, age 76, right hemisphere 28.9
Ventral tegmental area
nTPM: 29.5
2410 Female, age 72, unknown 31.1
1942 Male, age 51, unknown 30.1
1915 Female, age 42, unknown 29.8
2021 Male, age 53, unknown 29.1
2218 Male, age 76, both hemispheres 28.4
2223 Female, age 72, unknown 28.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.0
Samples: 139

Max nTPM: 46.4
Min nTPM: 4.0
Std nTPM: 7.5
Median nTPM: 18.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 46.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 43.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 35.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 35.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 35.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 33.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 32.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 31.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 31.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 30.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 29.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.8
FF:10158-103A5 76 years, female 26.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.2
Pig sample Sample description nTPM
Midbrain
nTPM: 22.3
Samples: 4

Max nTPM: 36.3
Min nTPM: 11.4
Sample A Female 36.3
Sample B Female 21.3
Sample C Male 20.0
Sample D Male 11.4
Periaqueductal gray
nTPM: 18.6
Samples: 3

Max nTPM: 22.3
Min nTPM: 14.7
Sample B Female 22.3
Sample C Male 18.9
Sample D Male 14.7
Substantia nigra
nTPM: 21.5
Samples: 4

Max nTPM: 25.5
Min nTPM: 19.5
Sample A Female 25.5
Sample B Female 19.5
Sample C Male 21.5
Sample D Male 19.5
Superior colliculi
nTPM: 16.7
Samples: 4

Max nTPM: 20.5
Min nTPM: 10.2
Sample A Female 20.5
Sample B Female 10.2
Sample C Male 19.6
Sample D Male 16.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.4
Samples: 4

Max nTPM: 11.0
Min nTPM: 9.6
Sample A Male 11.0
Sample B Male 10.0
Sample C Female 9.6
Sample D Female 11.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71234544 Antisense, RP_050505_02_C12, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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