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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.0 nTPM
HPA:99.0 nTPM
GTEx:63.5 nTPM
FANTOM5:447.2 Scaled Tags Per Million
Pig:52.6 nTPM
Mouse:26.6 nTPM
Allen mouse:0.9 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 99.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.6
2288 Male, age 75, left hemisphere 38.6
2846 Female, age 79, unknown 20.1
2481 Female, age 94, left hemisphere 16.2
1781 Male, age 74, unknown 16.0
1854 Male, age 80, left hemisphere 14.8
2290 Female, age 72, unknown 10.3
2289 Male, age 61, right hemisphere 6.6
1857 Female, age 85, left hemisphere 2.4
Claustrum
nTPM: 48.8
2292 Female, age 85, both hemispheres 111.8
1956 Male, age 74, unknown 73.1
2392 Female, age 94, both hemispheres 48.7
2196 Female, age 79, unknown 44.4
2198 Male, age 80, both hemispheres 37.5
2568 Male, age 61, both hemispheres 33.4
2284 Female, age 91, both hemispheres 31.7
2645 Female, age 72, unknown 29.9
2491 Male, age 75, both hemispheres 28.5
Globus pallidus, externus
nTPM: 96.0
2567 Female, age 72, unknown 125.5
2646 Male, age 61, right hemisphere 123.9
1996 Male, age 80, right hemisphere 101.8
2772 Female, age 79, unknown 71.9
2395 Male, age 75, both hemispheres 56.7
Globus pallidus, internus
nTPM: 99.0
2111 Female, age 85, right hemisphere 166.0
2566 Female, age 72, unknown 124.6
2778 Female, age 91, both hemispheres 104.4
2037 Male, age 80, right hemisphere 91.1
1818 Male, age 74, unknown 85.4
2287 Male, age 75, right hemisphere 75.9
2483 Female, age 94, right hemisphere 45.6
Nucleus accumbens
nTPM: 34.5
2391 Female, age 94, left hemisphere 88.2
2732 Male, age 80, right hemisphere 55.5
2698 Female, age 72, unknown 46.4
2286 Male, age 75, left hemisphere 33.0
1783 Male, age 74, unknown 19.4
1806 Female, age 85, left hemisphere 19.4
2824 Male, age 61, right hemisphere 14.1
1856 Female, age 91, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 46.6
2569 Male, age 61, both hemispheres 102.7
2821 Male, age 75, both hemispheres 38.0
2393 Male, age 80, right hemisphere 23.6
2484 Female, age 94, left hemisphere 22.0
Nucleus of the diagonal band
nTPM: 0.5
1979 Male, age 74, unknown 1.7
1812 Female, age 91, both hemispheres 0.9
2029 Male, age 61, right hemisphere 0.0
2195 Female, age 85, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 1.6
1998 Female, age 91, both hemispheres 4.2
2856 Male, age 75, right hemisphere 2.1
1846 Male, age 80, right hemisphere 0.0
2487 Female, age 94, left hemisphere 0.0
Putamen
nTPM: 28.4
2647 Male, age 75, left hemisphere 43.3
2482 Female, age 94, left hemisphere 41.4
1829 Male, age 74, unknown 40.2
2489 Female, age 72, unknown 38.4
1937 Female, age 91, right hemisphere 20.7
2466 Female, age 79, unknown 14.6
1838 Male, age 80, right hemisphere 0.0
Septal nuclei
nTPM: 11.7
2394 Male, age 61, left hemisphere 52.5
2199 Male, age 80, right hemisphere 18.4
2059 Female, age 85, both hemispheres 5.4
2629 Female, age 94, right hemisphere 5.4
1960 Male, age 74, unknown 0.0
2009 Female, age 91, both hemispheres 0.0
2031 Female, age 72, unknown 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 63.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 44.3
Samples: 246

Max nTPM: 139.9
Min nTPM: 6.8
Std nTPM: 24.8
Median nTPM: 36.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 139.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 130.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 125.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 116.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 102.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 96.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 96.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 94.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 93.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 93.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 92.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.7
Samples: 246

Max nTPM: 202.3
Min nTPM: 2.9
Std nTPM: 23.7
Median nTPM: 20.7
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 202.3
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 138.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 126.1
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 100.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 99.9
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 94.5
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 92.7
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 89.4
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 82.2
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 80.9
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 80.8
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Brain - Putamen (basal ganglia)
Average nTPM: 63.5
Samples: 205

Max nTPM: 296.1
Min nTPM: 14.4
Std nTPM: 32.8
Median nTPM: 57.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 296.1
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 176.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 134.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 129.7
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 128.6
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 128.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 128.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 127.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 121.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 117.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 116.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 447.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 95.2
FF:10164-103B2 76 years, female 95.2
Globus pallidus
Scaled Tags Per Million: 447.2
FF:10161-103A8 76 years, female 513.3
FF:10175-103C4 60 years, female 381.2
Nucleus accumbens
Scaled Tags Per Million: 266.4
FF:10037-101F1 23-56 years, mixed 266.4
Putamen
Scaled Tags Per Million: 98.5
FF:10176-103C5 60 years, female 98.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 52.6
Pig sample Sample description nTPM
Caudate
nTPM: 16.1
Samples: 4

Max nTPM: 17.1
Min nTPM: 15.1
Sample A Female 17.1
Sample B Female 16.2
Sample C Male 15.1
Sample D Male 16.0
Putamen
nTPM: 50.7
Samples: 4

Max nTPM: 92.9
Min nTPM: 21.6
Sample A Female 92.9
Sample B Female 21.6
Sample C Male 27.0
Sample D Male 61.3
Septum
nTPM: 32.2
Samples: 4

Max nTPM: 37.0
Min nTPM: 22.3
Sample A Female 35.2
Sample B Female 22.3
Sample C Male 37.0
Sample D Male 34.1
Ventral pallidum
nTPM: 52.6
Samples: 4

Max nTPM: 84.4
Min nTPM: 17.8
Sample A Female 17.8
Sample B Female 34.1
Sample C Male 84.4
Sample D Male 73.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 26.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 26.7
Samples: 4

Max nTPM: 29.0
Min nTPM: 22.9
Sample A Male 27.3
Sample B Male 29.0
Sample C Female 27.4
Sample D Female 22.9
Septum
nTPM: 22.5
Samples: 4

Max nTPM: 32.3
Min nTPM: 15.7
Sample A Male 15.7
Sample B Male 17.9
Sample C Female 24.2
Sample D Female 32.3
Ventral forebrain
nTPM: 14.4
Samples: 4

Max nTPM: 15.4
Min nTPM: 13.6
Sample A Male 14.1
Sample B Male 13.6
Sample C Female 14.6
Sample D Female 15.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.9
70295805 Antisense, RP_050531_03_H09, Mouse strain C57BL/6J (56 days, male) 0.9
Pallidum
Expression energy: 0.9
70295805 Antisense, RP_050531_03_H09, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.