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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.5 nTPM
HPA:15.5 nTPM
GTEx:26.0 nTPM
FANTOM5:16.9 Scaled Tags Per Million
Pig:1.4 nTPM
Mouse:41.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.1
1870 Female, age 42, unknown 16.7
2411 Female, age 72, unknown 15.9
1830 Male, age 51, unknown 15.2
2586 Male, age 75, left hemisphere 15.2
2019 Male, age 18, unknown 15.1
2828 Female, age 72, unknown 15.0
1833 Male, age 53, unknown 14.9
2219 Male, age 76, both hemispheres 14.6
1827 Male, age 72, unknown 14.4
2666 Male, age 74, left hemisphere 13.4
Dorsal raphe nucleus
nTPM: 14.8
2298 Female, age 72, unknown 16.4
1828 Male, age 53, unknown 15.4
2016 Female, age 72, unknown 15.1
2750 Male, age 76, both hemispheres 13.9
2047 Male, age 72, unknown 13.2
Inferior colliculus
nTPM: 14.3
2849 Male, age 72, unknown 14.7
1848 Female, age 42, unknown 14.2
1890 Male, age 53, unknown 14.2
2097 Female, age 72, unknown 14.1
Median raphe nucleus
nTPM: 14.1
2220 Male, age 76, midline 14.1
Pedunculopontine tegmental nucleus
nTPM: 14.7
2334 Male, age 80, both hemispheres 15.0
2338 Male, age 61, both hemispheres 14.6
1921 Female, age 85, both hemispheres 14.4
Periaquaductal grey, anterior
nTPM: 15.3
2502 Female, age 75, unknown 16.2
1795 Male, age 51, unknown 15.3
1947 Male, age 18, unknown 14.3
Periaquaductal grey, dorsal
nTPM: 14.4
2850 Male, age 76, both hemispheres 14.8
1831 Male, age 72, unknown 14.4
1840 Male, age 53, unknown 14.4
2464 Female, age 72, unknown 14.0
Periaquaductal grey, lateral
nTPM: 15.4
2272 Male, age 74, both hemispheres 15.9
2140 Male, age 76, both hemispheres 15.8
2053 Male, age 18, unknown 14.4
Pretectal area
nTPM: 14.5
2273 Male, age 74, both hemispheres 16.5
2407 Male, age 75, both hemispheres 15.4
2224 Female, age 72, unknown 15.0
2825 Male, age 18, unknown 15.0
1944 Female, age 72, unknown 14.8
2316 Male, age 76, right hemisphere 14.6
1817 Female, age 42, unknown 14.0
2007 Male, age 72, unknown 14.0
1815 Male, age 53, unknown 13.8
1816 Male, age 51, unknown 13.4
2667 Female, age 75, unknown 12.6
Red nucleus
nTPM: 15.5
1904 Male, age 53, unknown 16.9
2503 Female, age 72, unknown 16.7
2769 Male, age 72, unknown 16.6
2227 Male, age 72, unknown 16.2
1865 Male, age 51, unknown 15.9
2725 Female, age 75, unknown 15.9
2785 Male, age 18, unknown 15.3
2823 Male, age 76, right hemisphere 15.0
1821 Female, age 72, unknown 14.5
1954 Female, age 42, unknown 14.5
2588 Male, age 74, left hemisphere 14.4
2584 Male, age 75, left hemisphere 14.3
Substantia nigra
nTPM: 15.4
2699 Male, age 18, unknown 17.5
1851 Male, age 51, unknown 16.4
1916 Female, age 42, unknown 15.9
2409 Female, age 72, unknown 15.9
2590 Female, age 75, unknown 15.5
1941 Male, age 53, unknown 15.2
2665 Male, age 74, both hemispheres 14.9
2241 Male, age 72, unknown 14.6
1889 Female, age 72, unknown 14.3
2583 Male, age 75, right hemisphere 14.2
Superior colliculus
nTPM: 14.7
1995 Male, age 72, unknown 16.3
2668 Female, age 75, unknown 15.6
1913 Female, age 42, unknown 15.0
1839 Male, age 51, unknown 14.6
2664 Male, age 75, both hemispheres 14.6
2087 Female, age 72, unknown 14.5
2587 Male, age 74, left hemisphere 14.4
1895 Male, age 76, right hemisphere 14.2
2261 Male, age 18, unknown 14.2
1796 Male, age 53, unknown 13.7
Ventral tegmental area
nTPM: 15.4
1915 Female, age 42, unknown 16.3
2218 Male, age 76, both hemispheres 15.8
2410 Female, age 72, unknown 15.7
2021 Male, age 53, unknown 15.6
1942 Male, age 51, unknown 15.0
2223 Female, age 72, unknown 14.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.0
Samples: 139

Max nTPM: 52.6
Min nTPM: 9.0
Std nTPM: 7.6
Median nTPM: 25.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 52.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 50.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 45.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 42.2
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 40.4
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 40.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 38.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 38.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 37.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 36.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.9
FF:10158-103A5 76 years, female 16.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 1.4
Pig sample Sample description nTPM
Midbrain
nTPM: 1.2
Samples: 4

Max nTPM: 1.9
Min nTPM: 0.8
Sample A Female 1.1
Sample B Female 1.9
Sample C Male 0.8
Sample D Male 1.1
Periaqueductal gray
nTPM: 1.0
Samples: 3

Max nTPM: 1.2
Min nTPM: 0.8
Sample B Female 0.8
Sample C Male 1.2
Sample D Male 1.1
Substantia nigra
nTPM: 1.4
Samples: 4

Max nTPM: 1.7
Min nTPM: 1.1
Sample A Female 1.1
Sample B Female 1.7
Sample C Male 1.1
Sample D Male 1.6
Superior colliculi
nTPM: 1.2
Samples: 4

Max nTPM: 1.6
Min nTPM: 1.0
Sample A Female 1.2
Sample B Female 1.6
Sample C Male 1.1
Sample D Male 1.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 41.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 41.7
Samples: 4

Max nTPM: 48.3
Min nTPM: 37.3
Sample A Male 48.3
Sample B Male 37.3
Sample C Female 38.5
Sample D Female 42.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68269279 Antisense, RP_041209_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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