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SLC25A23
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:98.2 nTPM
HPA:98.2 nTPM
GTEx:103.1 nTPM
FANTOM5:98.9 Scaled Tags Per Million
Pig:52.4 nTPM
Mouse:129.3 nTPM
Allen mouse:6.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.6
2586 Male, age 75, left hemisphere 118.2
2828 Female, age 72, unknown 103.3
2219 Male, age 76, both hemispheres 96.8
2666 Male, age 74, left hemisphere 96.4
1827 Male, age 72, unknown 90.0
1870 Female, age 42, unknown 89.7
1833 Male, age 53, unknown 82.3
2411 Female, age 72, unknown 81.6
1830 Male, age 51, unknown 80.0
2019 Male, age 18, unknown 58.0
Dorsal raphe nucleus
nTPM: 80.1
2750 Male, age 76, both hemispheres 84.5
2047 Male, age 72, unknown 84.0
1828 Male, age 53, unknown 77.5
2016 Female, age 72, unknown 77.3
2298 Female, age 72, unknown 77.1
Inferior colliculus
nTPM: 82.9
2849 Male, age 72, unknown 100.9
1848 Female, age 42, unknown 89.3
1890 Male, age 53, unknown 72.2
2097 Female, age 72, unknown 69.3
Median raphe nucleus
nTPM: 92.9
2220 Male, age 76, midline 92.9
Pedunculopontine tegmental nucleus
nTPM: 82.9
2334 Male, age 80, both hemispheres 84.2
1921 Female, age 85, both hemispheres 82.8
2338 Male, age 61, both hemispheres 81.8
Periaquaductal grey, anterior
nTPM: 98.2
1947 Male, age 18, unknown 103.7
1795 Male, age 51, unknown 98.4
2502 Female, age 75, unknown 92.6
Periaquaductal grey, dorsal
nTPM: 83.3
1840 Male, age 53, unknown 91.1
2464 Female, age 72, unknown 83.4
2850 Male, age 76, both hemispheres 79.6
1831 Male, age 72, unknown 79.2
Periaquaductal grey, lateral
nTPM: 78.5
2053 Male, age 18, unknown 95.3
2140 Male, age 76, both hemispheres 73.5
2272 Male, age 74, both hemispheres 66.8
Pretectal area
nTPM: 83.8
2825 Male, age 18, unknown 98.2
1816 Male, age 51, unknown 92.8
2407 Male, age 75, both hemispheres 92.4
2667 Female, age 75, unknown 89.8
1944 Female, age 72, unknown 86.5
2007 Male, age 72, unknown 83.5
1815 Male, age 53, unknown 82.2
1817 Female, age 42, unknown 80.7
2224 Female, age 72, unknown 80.1
2273 Male, age 74, both hemispheres 68.2
2316 Male, age 76, right hemisphere 67.2
Red nucleus
nTPM: 73.9
2584 Male, age 75, left hemisphere 91.4
2588 Male, age 74, left hemisphere 89.8
2725 Female, age 75, unknown 81.7
2503 Female, age 72, unknown 78.9
2769 Male, age 72, unknown 72.5
2227 Male, age 72, unknown 71.4
1954 Female, age 42, unknown 70.8
1865 Male, age 51, unknown 68.0
1821 Female, age 72, unknown 67.9
2785 Male, age 18, unknown 66.6
1904 Male, age 53, unknown 65.8
2823 Male, age 76, right hemisphere 62.6
Substantia nigra
nTPM: 86.1
1941 Male, age 53, unknown 110.9
2665 Male, age 74, both hemispheres 94.9
2699 Male, age 18, unknown 90.4
2583 Male, age 75, right hemisphere 88.0
1851 Male, age 51, unknown 85.8
1889 Female, age 72, unknown 84.0
1916 Female, age 42, unknown 81.8
2241 Male, age 72, unknown 77.5
2590 Female, age 75, unknown 76.7
2409 Female, age 72, unknown 70.6
Superior colliculus
nTPM: 88.4
2664 Male, age 75, both hemispheres 117.5
2261 Male, age 18, unknown 95.4
1796 Male, age 53, unknown 90.2
1839 Male, age 51, unknown 89.5
2668 Female, age 75, unknown 84.6
2087 Female, age 72, unknown 83.5
2587 Male, age 74, left hemisphere 82.5
1895 Male, age 76, right hemisphere 81.9
1913 Female, age 42, unknown 80.5
1995 Male, age 72, unknown 78.4
Ventral tegmental area
nTPM: 84.8
2223 Female, age 72, unknown 99.6
1915 Female, age 42, unknown 86.6
1942 Male, age 51, unknown 86.6
2021 Male, age 53, unknown 82.8
2218 Male, age 76, both hemispheres 79.1
2410 Female, age 72, unknown 74.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 103.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 103.1
Samples: 139

Max nTPM: 260.2
Min nTPM: 63.3
Std nTPM: 27.5
Median nTPM: 96.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 260.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 220.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 181.1
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 165.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 156.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 154.6
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 149.2
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 146.3
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 145.9
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 143.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 143.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 98.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 98.9
FF:10158-103A5 76 years, female 98.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 52.4
Pig sample Sample description nTPM
Midbrain
nTPM: 52.4
Samples: 4

Max nTPM: 91.6
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 31.5
Sample C Male 91.6
Sample D Male 60.4
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 31.7
Min nTPM: 28.6
Sample B Female 30.5
Sample C Male 31.7
Sample D Male 28.6
Substantia nigra
nTPM: 31.7
Samples: 4

Max nTPM: 37.6
Min nTPM: 28.1
Sample A Female 29.4
Sample B Female 28.1
Sample C Male 37.6
Sample D Male 31.7
Superior colliculi
nTPM: 46.5
Samples: 4

Max nTPM: 59.7
Min nTPM: 30.2
Sample A Female 43.3
Sample B Female 30.2
Sample C Male 59.7
Sample D Male 52.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 129.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 129.3
Samples: 4

Max nTPM: 132.7
Min nTPM: 122.6
Sample A Male 132.7
Sample B Male 122.6
Sample C Female 132.5
Sample D Female 129.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.4
71280844 Antisense, RP_050818_01_G01, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.