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ATG4C
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA:29.9 nTPM
GTEx:15.4 nTPM
FANTOM5:178.1 Scaled Tags Per Million
Pig:12.9 nTPM
Mouse:24.8 nTPM
Allen mouse:2.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
1830 Male, age 51, unknown 31.8
1833 Male, age 53, unknown 30.1
1870 Female, age 42, unknown 29.4
2411 Female, age 72, unknown 28.2
2219 Male, age 76, both hemispheres 24.1
2019 Male, age 18, unknown 22.9
2666 Male, age 74, left hemisphere 21.7
2828 Female, age 72, unknown 20.2
1827 Male, age 72, unknown 18.2
2586 Male, age 75, left hemisphere 13.0
Dorsal raphe nucleus
nTPM: 17.6
2750 Male, age 76, both hemispheres 24.2
2016 Female, age 72, unknown 23.4
1828 Male, age 53, unknown 15.7
2298 Female, age 72, unknown 12.8
2047 Male, age 72, unknown 11.8
Inferior colliculus
nTPM: 19.5
1848 Female, age 42, unknown 20.9
2849 Male, age 72, unknown 20.1
2097 Female, age 72, unknown 18.9
1890 Male, age 53, unknown 18.3
Median raphe nucleus
nTPM: 13.2
2220 Male, age 76, midline 13.2
Pedunculopontine tegmental nucleus
nTPM: 22.9
1921 Female, age 85, both hemispheres 24.3
2334 Male, age 80, both hemispheres 23.7
2338 Male, age 61, both hemispheres 20.6
Periaquaductal grey, anterior
nTPM: 18.4
2502 Female, age 75, unknown 23.4
1947 Male, age 18, unknown 20.9
1795 Male, age 51, unknown 10.9
Periaquaductal grey, dorsal
nTPM: 15.8
2464 Female, age 72, unknown 23.6
1831 Male, age 72, unknown 15.3
1840 Male, age 53, unknown 12.1
2850 Male, age 76, both hemispheres 12.1
Periaquaductal grey, lateral
nTPM: 15.1
2053 Male, age 18, unknown 18.9
2272 Male, age 74, both hemispheres 14.1
2140 Male, age 76, both hemispheres 12.3
Pretectal area
nTPM: 16.4
2316 Male, age 76, right hemisphere 27.0
1815 Male, age 53, unknown 20.8
2825 Male, age 18, unknown 18.0
2224 Female, age 72, unknown 16.9
2007 Male, age 72, unknown 16.8
2273 Male, age 74, both hemispheres 16.5
1817 Female, age 42, unknown 16.3
2407 Male, age 75, both hemispheres 13.8
2667 Female, age 75, unknown 12.4
1944 Female, age 72, unknown 11.5
1816 Male, age 51, unknown 10.2
Red nucleus
nTPM: 29.9
2503 Female, age 72, unknown 36.8
1821 Female, age 72, unknown 35.7
1865 Male, age 51, unknown 35.7
1904 Male, age 53, unknown 34.4
1954 Female, age 42, unknown 33.1
2823 Male, age 76, right hemisphere 29.1
2588 Male, age 74, left hemisphere 28.7
2785 Male, age 18, unknown 28.7
2769 Male, age 72, unknown 28.4
2227 Male, age 72, unknown 28.1
2725 Female, age 75, unknown 25.6
2584 Male, age 75, left hemisphere 14.6
Substantia nigra
nTPM: 19.5
2241 Male, age 72, unknown 23.1
2409 Female, age 72, unknown 21.9
1889 Female, age 72, unknown 20.9
1851 Male, age 51, unknown 20.8
2583 Male, age 75, right hemisphere 20.2
2590 Female, age 75, unknown 19.4
2699 Male, age 18, unknown 18.9
1941 Male, age 53, unknown 16.8
2665 Male, age 74, both hemispheres 16.8
1916 Female, age 42, unknown 15.7
Superior colliculus
nTPM: 21.6
1913 Female, age 42, unknown 31.4
1995 Male, age 72, unknown 30.3
1895 Male, age 76, right hemisphere 29.4
1839 Male, age 51, unknown 23.7
2587 Male, age 74, left hemisphere 22.7
2668 Female, age 75, unknown 22.5
1796 Male, age 53, unknown 17.8
2087 Female, age 72, unknown 15.5
2261 Male, age 18, unknown 12.9
2664 Male, age 75, both hemispheres 9.6
Ventral tegmental area
nTPM: 19.3
2410 Female, age 72, unknown 25.3
1942 Male, age 51, unknown 20.9
2223 Female, age 72, unknown 20.2
2021 Male, age 53, unknown 17.8
1915 Female, age 42, unknown 16.8
2218 Male, age 76, both hemispheres 14.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.4
Samples: 139

Max nTPM: 38.8
Min nTPM: 6.0
Std nTPM: 6.5
Median nTPM: 13.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 38.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 38.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 35.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 34.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 32.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 30.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 30.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 27.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 26.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 26.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 178.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 178.1
FF:10158-103A5 76 years, female 178.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 12.9
Pig sample Sample description nTPM
Midbrain
nTPM: 12.8
Samples: 4

Max nTPM: 16.4
Min nTPM: 8.9
Sample A Female 14.8
Sample B Female 16.4
Sample C Male 8.9
Sample D Male 11.0
Periaqueductal gray
nTPM: 12.7
Samples: 3

Max nTPM: 14.0
Min nTPM: 10.2
Sample B Female 13.9
Sample C Male 10.2
Sample D Male 14.0
Substantia nigra
nTPM: 12.9
Samples: 4

Max nTPM: 16.5
Min nTPM: 11.3
Sample A Female 12.2
Sample B Female 11.6
Sample C Male 11.3
Sample D Male 16.5
Superior colliculi
nTPM: 10.6
Samples: 4

Max nTPM: 12.4
Min nTPM: 8.3
Sample A Female 10.0
Sample B Female 8.3
Sample C Male 11.5
Sample D Male 12.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.8
Samples: 4

Max nTPM: 26.1
Min nTPM: 23.9
Sample A Male 23.9
Sample B Male 24.7
Sample C Female 26.1
Sample D Female 24.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.6
70523729 Antisense, RP_050301_02_C03, Mouse strain C57BL/6J (56 days, male) 2.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.