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ATG4C
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:19.7 nTPM
HPA:19.7 nTPM
GTEx:14.6 nTPM
FANTOM5:71.8 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:24.6 nTPM
Allen mouse:7.5 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007049
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 19.7
Sample id Sample description nTPM
Hippocampus
nTPM: 14.8
1911 Female, age 85, right hemisphere 18.8
2529 Female, age 94, left hemisphere 16.4
2621 Female, age 67, right hemisphere 15.1
1855 Male, age 76, left hemisphere 14.0
1898 Male, age 80, left hemisphere 13.1
2148 Female, age 91, left hemisphere 11.4
Dentate gyrus
nTPM: 14.0
2530 Female, age 94, left hemisphere 21.0
2010 Male, age 76, both hemispheres 14.5
2528 Male, age 74, both hemispheres 14.3
1927 Female, age 91, both hemispheres 12.1
2246 Female, age 85, both hemispheres 12.0
2531 Female, age 67, both hemispheres 10.3
Entorhinal gyrus
nTPM: 16.2
2117 Female, age 91, right hemisphere 23.8
2686 Male, age 75, right hemisphere 16.6
1938 Female, age 85, left hemisphere 16.1
2764 Male, age 80, right hemisphere 14.1
2613 Female, age 94, left hemisphere 13.5
1787 Male, age 76, left hemisphere 13.3
Hippocampus, CA1
nTPM: 11.8
1873 Female, age 85, both hemispheres 14.7
2082 Female, age 91, right hemisphere 14.5
2527 Male, age 74, both hemispheres 12.5
2749 Male, age 80, left hemisphere 8.7
2045 Male, age 76, both hemispheres 8.5
Hippocampus, CA2
nTPM: 15.5
2249 Male, age 74, both hemispheres 17.6
1963 Male, age 80, left hemisphere 17.3
2113 Female, age 91, right hemisphere 15.9
1940 Female, age 85, left hemisphere 15.8
2437 Female, age 94, left hemisphere 14.6
1892 Male, age 76, both hemispheres 11.8
Hippocampus, CA3
nTPM: 11.1
1891 Female, age 85, both hemispheres 23.3
1867 Male, age 76, both hemispheres 11.7
2436 Male, age 74, both hemispheres 10.5
2137 Male, age 80, left hemisphere 8.2
2861 Female, age 67, both hemispheres 6.5
2620 Female, age 94, left hemisphere 6.1
Parahippocampal cortex
nTPM: 14.7
2692 Male, age 74, both hemispheres 18.3
1990 Female, age 91, right hemisphere 18.1
1850 Male, age 80, both hemispheres 18.0
2532 Female, age 72, left hemisphere 17.8
2018 Male, age 76, both hemispheres 16.4
1933 Female, age 85, both hemispheres 14.8
2245 Female, age 91, both hemispheres 13.9
2693 Female, age 94, both hemispheres 11.1
2250 Female, age 67, right hemisphere 10.3
2622 Female, age 67, right hemisphere 7.8
Perirhinal gyrus
nTPM: 12.2
2848 Male, age 76, right hemisphere 16.5
1841 Female, age 85, right hemisphere 11.7
2521 Female, age 94, right hemisphere 11.6
1847 Female, age 91, left hemisphere 11.1
1794 Male, age 80, right hemisphere 10.0
Subiculum
nTPM: 19.7
2438 Female, age 94, left hemisphere 26.9
1901 Male, age 80, both hemispheres 24.1
2042 Male, age 76, both hemispheres 21.8
1977 Female, age 85, both hemispheres 19.2
2729 Female, age 91, right hemisphere 14.3
2619 Male, age 74, both hemispheres 11.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.6
Samples: 197

Max nTPM: 39.7
Min nTPM: 3.6
Std nTPM: 6.7
Median nTPM: 12.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 39.7
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 35.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 35.0
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 33.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 31.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 30.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 30.3
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 29.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 29.7
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 29.4
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 29.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.8
FF:10153-102I9 76 years, female 75.7
FF:10169-103B7 60 years, female 68.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 9.9
Samples: 4

Max nTPM: 11.7
Min nTPM: 7.9
Sample A Female 10.6
Sample B Female 9.4
Sample C Male 11.7
Sample D Male 7.9
Entorhinal cortex
nTPM: 7.4
Samples: 4

Max nTPM: 8.2
Min nTPM: 6.5
Sample A Female 6.5
Sample B Female 8.2
Sample C Male 7.2
Sample D Male 7.6
Subiculum
nTPM: 7.7
Samples: 4

Max nTPM: 8.4
Min nTPM: 6.8
Sample A Female 6.8
Sample B Female 8.4
Sample C Male 7.5
Sample D Male 7.9
Ventral hippocampus
nTPM: 8.3
Samples: 4

Max nTPM: 9.6
Min nTPM: 6.5
Sample A Female 8.7
Sample B Female 8.4
Sample C Male 6.5
Sample D Male 9.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 24.2
Samples: 4

Max nTPM: 29.0
Min nTPM: 20.7
Sample A Male 24.9
Sample B Male 29.0
Sample C Female 22.3
Sample D Female 20.7
Hippocampal formation
nTPM: 24.6
Samples: 4

Max nTPM: 27.5
Min nTPM: 22.4
Sample A Male 23.8
Sample B Male 24.7
Sample C Female 27.5
Sample D Female 22.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.5
70523729 Antisense, RP_050301_02_C03, Mouse strain C57BL/6J (56 days, male) 7.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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