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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.2 nTPM
HPA:99.2 nTPM
GTEx:54.2 nTPM
FANTOM5:672.0 Scaled Tags Per Million
Pig:159.1 nTPM
Mouse:2.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 99.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 41.7
2828 Female, age 72, unknown 54.1
2586 Male, age 75, left hemisphere 53.1
1830 Male, age 51, unknown 51.5
2019 Male, age 18, unknown 41.8
1870 Female, age 42, unknown 41.2
2666 Male, age 74, left hemisphere 40.8
1833 Male, age 53, unknown 38.6
1827 Male, age 72, unknown 35.3
2411 Female, age 72, unknown 35.3
2219 Male, age 76, both hemispheres 25.8
Dorsal raphe nucleus
nTPM: 52.0
2016 Female, age 72, unknown 72.2
2298 Female, age 72, unknown 57.6
1828 Male, age 53, unknown 51.2
2047 Male, age 72, unknown 41.3
2750 Male, age 76, both hemispheres 37.8
Inferior colliculus
nTPM: 41.5
2097 Female, age 72, unknown 49.7
2849 Male, age 72, unknown 39.8
1848 Female, age 42, unknown 38.4
1890 Male, age 53, unknown 37.9
Median raphe nucleus
nTPM: 30.2
2220 Male, age 76, midline 30.2
Pedunculopontine tegmental nucleus
nTPM: 99.2
2338 Male, age 61, both hemispheres 229.2
2334 Male, age 80, both hemispheres 45.1
1921 Female, age 85, both hemispheres 23.3
Periaquaductal grey, anterior
nTPM: 45.7
2502 Female, age 75, unknown 54.3
1795 Male, age 51, unknown 51.8
1947 Male, age 18, unknown 31.1
Periaquaductal grey, dorsal
nTPM: 62.1
1831 Male, age 72, unknown 80.2
2850 Male, age 76, both hemispheres 66.7
1840 Male, age 53, unknown 55.0
2464 Female, age 72, unknown 46.6
Periaquaductal grey, lateral
nTPM: 61.1
2140 Male, age 76, both hemispheres 66.8
2272 Male, age 74, both hemispheres 60.2
2053 Male, age 18, unknown 56.1
Pretectal area
nTPM: 39.4
2407 Male, age 75, both hemispheres 67.4
2316 Male, age 76, right hemisphere 47.9
2224 Female, age 72, unknown 47.6
2273 Male, age 74, both hemispheres 46.1
1815 Male, age 53, unknown 41.5
1817 Female, age 42, unknown 40.0
2825 Male, age 18, unknown 38.4
1944 Female, age 72, unknown 35.3
2007 Male, age 72, unknown 33.2
2667 Female, age 75, unknown 20.1
1816 Male, age 51, unknown 15.8
Red nucleus
nTPM: 51.1
2725 Female, age 75, unknown 103.3
1865 Male, age 51, unknown 62.4
2503 Female, age 72, unknown 61.7
2584 Male, age 75, left hemisphere 59.1
2769 Male, age 72, unknown 48.1
2227 Male, age 72, unknown 47.4
2785 Male, age 18, unknown 46.2
2823 Male, age 76, right hemisphere 46.2
1904 Male, age 53, unknown 44.3
1954 Female, age 42, unknown 37.6
1821 Female, age 72, unknown 33.0
2588 Male, age 74, left hemisphere 24.2
Substantia nigra
nTPM: 67.6
2699 Male, age 18, unknown 117.4
2590 Female, age 75, unknown 102.7
2665 Male, age 74, both hemispheres 87.0
1851 Male, age 51, unknown 67.3
1916 Female, age 42, unknown 59.0
2583 Male, age 75, right hemisphere 59.0
2409 Female, age 72, unknown 55.4
1941 Male, age 53, unknown 50.5
2241 Male, age 72, unknown 50.3
1889 Female, age 72, unknown 27.9
Superior colliculus
nTPM: 46.4
1913 Female, age 42, unknown 80.2
1995 Male, age 72, unknown 69.2
2664 Male, age 75, both hemispheres 66.2
2587 Male, age 74, left hemisphere 46.7
1839 Male, age 51, unknown 42.6
1796 Male, age 53, unknown 41.1
2087 Female, age 72, unknown 41.0
2261 Male, age 18, unknown 33.9
1895 Male, age 76, right hemisphere 29.9
2668 Female, age 75, unknown 13.2
Ventral tegmental area
nTPM: 56.7
2021 Male, age 53, unknown 89.9
1915 Female, age 42, unknown 58.3
1942 Male, age 51, unknown 57.6
2218 Male, age 76, both hemispheres 49.0
2410 Female, age 72, unknown 45.0
2223 Female, age 72, unknown 40.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 54.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.2
Samples: 139

Max nTPM: 304.9
Min nTPM: 4.0
Std nTPM: 55.3
Median nTPM: 34.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 304.9
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 285.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 262.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 203.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 203.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 180.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 178.8
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 162.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 162.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 148.9
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 136.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 672.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 672.0
FF:10158-103A5 76 years, female 672.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 159.1
Pig sample Sample description nTPM
Midbrain
nTPM: 115.7
Samples: 4

Max nTPM: 192.8
Min nTPM: 57.0
Sample A Female 192.8
Sample B Female 146.7
Sample C Male 57.0
Sample D Male 66.3
Periaqueductal gray
nTPM: 159.1
Samples: 3

Max nTPM: 206.8
Min nTPM: 125.9
Sample B Female 144.6
Sample C Male 206.8
Sample D Male 125.9
Substantia nigra
nTPM: 156.9
Samples: 4

Max nTPM: 172.7
Min nTPM: 142.4
Sample A Female 142.4
Sample B Female 172.7
Sample C Male 155.9
Sample D Male 156.4
Superior colliculi
nTPM: 85.4
Samples: 4

Max nTPM: 93.5
Min nTPM: 63.7
Sample A Female 93.5
Sample B Female 63.7
Sample C Male 91.2
Sample D Male 93.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.0
Samples: 4

Max nTPM: 2.8
Min nTPM: 1.3
Sample A Male 2.0
Sample B Male 2.8
Sample C Female 1.9
Sample D Female 1.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
70528425 Antisense, RP_050623_02_E10, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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