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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:102.4 nTPM
HPA:102.4 nTPM
GTEx:103.9 nTPM
FANTOM5:252.5 Scaled Tags Per Million
Pig:116.1 nTPM
Mouse:318.1 nTPM
Allen mouse:22.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA046149Antibody HPA050196Antibody CAB037225Antibody CAB037227
Glial cells Not detectedNot detectedNot detectedLow
Neuronal cells HighMediumMediumHigh









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 102.4
Sample id Sample description nTPM
Hippocampus
nTPM: 47.3
1898 Male, age 80, left hemisphere 90.6
1855 Male, age 76, left hemisphere 59.1
2621 Female, age 67, right hemisphere 50.6
2148 Female, age 91, left hemisphere 42.5
1911 Female, age 85, right hemisphere 25.7
2529 Female, age 94, left hemisphere 15.2
Dentate gyrus
nTPM: 57.3
1927 Female, age 91, both hemispheres 108.1
2010 Male, age 76, both hemispheres 59.3
2246 Female, age 85, both hemispheres 51.8
2530 Female, age 94, left hemisphere 45.3
2531 Female, age 67, both hemispheres 39.8
2528 Male, age 74, both hemispheres 39.3
Entorhinal gyrus
nTPM: 52.3
2613 Female, age 94, left hemisphere 71.1
2764 Male, age 80, right hemisphere 70.5
1938 Female, age 85, left hemisphere 66.5
1787 Male, age 76, left hemisphere 49.0
2686 Male, age 75, right hemisphere 35.2
2117 Female, age 91, right hemisphere 21.9
Hippocampus, CA1
nTPM: 68.5
2749 Male, age 80, left hemisphere 134.5
1873 Female, age 85, both hemispheres 68.8
2045 Male, age 76, both hemispheres 55.2
2082 Female, age 91, right hemisphere 46.1
2527 Male, age 74, both hemispheres 37.8
Hippocampus, CA2
nTPM: 58.8
1963 Male, age 80, left hemisphere 96.7
1892 Male, age 76, both hemispheres 91.1
1940 Female, age 85, left hemisphere 53.7
2113 Female, age 91, right hemisphere 43.9
2437 Female, age 94, left hemisphere 37.6
2249 Male, age 74, both hemispheres 30.1
Hippocampus, CA3
nTPM: 52.1
2137 Male, age 80, left hemisphere 94.3
1867 Male, age 76, both hemispheres 57.0
2620 Female, age 94, left hemisphere 49.8
2436 Male, age 74, both hemispheres 40.9
1891 Female, age 85, both hemispheres 38.3
2861 Female, age 67, both hemispheres 32.1
Parahippocampal cortex
nTPM: 61.7
1850 Male, age 80, both hemispheres 102.6
1990 Female, age 91, right hemisphere 83.4
2693 Female, age 94, both hemispheres 72.7
2245 Female, age 91, both hemispheres 70.8
1933 Female, age 85, both hemispheres 66.4
2250 Female, age 67, right hemisphere 62.5
2532 Female, age 72, left hemisphere 59.8
2018 Male, age 76, both hemispheres 40.9
2622 Female, age 67, right hemisphere 31.4
2692 Male, age 74, both hemispheres 26.1
Perirhinal gyrus
nTPM: 102.4
1847 Female, age 91, left hemisphere 145.3
2521 Female, age 94, right hemisphere 107.6
1794 Male, age 80, right hemisphere 102.4
1841 Female, age 85, right hemisphere 88.5
2848 Male, age 76, right hemisphere 68.2
Subiculum
nTPM: 35.7
1977 Female, age 85, both hemispheres 55.9
1901 Male, age 80, both hemispheres 55.1
2438 Female, age 94, left hemisphere 31.8
2729 Female, age 91, right hemisphere 25.3
2619 Male, age 74, both hemispheres 23.9
2042 Male, age 76, both hemispheres 22.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 103.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 103.9
Samples: 197

Max nTPM: 394.7
Min nTPM: 12.8
Std nTPM: 70.7
Median nTPM: 90.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 394.7
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 282.1
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 272.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 270.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 266.1
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 256.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 255.6
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 251.8
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 248.4
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 243.5
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 242.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 252.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 252.5
FF:10169-103B7 60 years, female 363.0
FF:10153-102I9 76 years, female 142.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 116.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 111.4
Samples: 4

Max nTPM: 146.3
Min nTPM: 66.7
Sample A Female 146.3
Sample B Female 142.3
Sample C Male 66.7
Sample D Male 90.1
Entorhinal cortex
nTPM: 89.3
Samples: 4

Max nTPM: 94.2
Min nTPM: 85.4
Sample A Female 94.2
Sample B Female 85.4
Sample C Male 91.1
Sample D Male 86.4
Subiculum
nTPM: 91.5
Samples: 4

Max nTPM: 115.7
Min nTPM: 77.9
Sample A Female 115.7
Sample B Female 80.9
Sample C Male 91.4
Sample D Male 77.9
Ventral hippocampus
nTPM: 116.1
Samples: 4

Max nTPM: 142.8
Min nTPM: 81.2
Sample A Female 142.8
Sample B Female 81.2
Sample C Male 129.9
Sample D Male 110.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 318.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 318.1
Samples: 4

Max nTPM: 398.8
Min nTPM: 265.1
Sample A Male 265.1
Sample B Male 310.2
Sample C Female 298.1
Sample D Female 398.8
Hippocampal formation
nTPM: 288.3
Samples: 4

Max nTPM: 322.1
Min nTPM: 243.5
Sample A Male 322.1
Sample B Male 288.4
Sample C Female 299.0
Sample D Female 243.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 22.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 22.3
68924401 Antisense, RP_050303_02_C08, Mouse strain C57BL/6J (56 days, male) 23.6
75651234 Antisense, RP_060518_01_D12, Mouse strain C57BL/6J (56 days, male) 21.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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