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PSMF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:31.5 nTPM
HPA:31.5 nTPM
GTEx:37.5 nTPM
FANTOM5:71.5 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:32.4 nTPM
Allen mouse:3.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041122Antibody HPA041300
Glial cells Not detectedLow
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.5
Sample id Sample description nTPM
Hippocampus
nTPM: 31.5
2621 Female, age 67, right hemisphere 37.7
1898 Male, age 80, left hemisphere 33.7
1855 Male, age 76, left hemisphere 31.0
2529 Female, age 94, left hemisphere 29.8
2148 Female, age 91, left hemisphere 29.3
1911 Female, age 85, right hemisphere 27.7
Dentate gyrus
nTPM: 30.9
2530 Female, age 94, left hemisphere 35.7
2246 Female, age 85, both hemispheres 32.7
2010 Male, age 76, both hemispheres 32.3
2531 Female, age 67, both hemispheres 28.7
2528 Male, age 74, both hemispheres 28.3
1927 Female, age 91, both hemispheres 27.7
Entorhinal gyrus
nTPM: 31.1
2764 Male, age 80, right hemisphere 32.2
1787 Male, age 76, left hemisphere 32.0
1938 Female, age 85, left hemisphere 31.5
2117 Female, age 91, right hemisphere 31.1
2686 Male, age 75, right hemisphere 30.9
2613 Female, age 94, left hemisphere 29.1
Hippocampus, CA1
nTPM: 29.8
1873 Female, age 85, both hemispheres 33.8
2045 Male, age 76, both hemispheres 30.0
2749 Male, age 80, left hemisphere 29.8
2082 Female, age 91, right hemisphere 28.0
2527 Male, age 74, both hemispheres 27.5
Hippocampus, CA2
nTPM: 28.8
2437 Female, age 94, left hemisphere 31.4
1892 Male, age 76, both hemispheres 30.7
1963 Male, age 80, left hemisphere 28.8
1940 Female, age 85, left hemisphere 27.8
2113 Female, age 91, right hemisphere 27.6
2249 Male, age 74, both hemispheres 26.8
Hippocampus, CA3
nTPM: 30.4
2620 Female, age 94, left hemisphere 37.3
2861 Female, age 67, both hemispheres 33.3
2436 Male, age 74, both hemispheres 29.0
2137 Male, age 80, left hemisphere 28.5
1891 Female, age 85, both hemispheres 27.6
1867 Male, age 76, both hemispheres 26.8
Parahippocampal cortex
nTPM: 31.3
1850 Male, age 80, both hemispheres 33.9
2622 Female, age 67, right hemisphere 33.9
2532 Female, age 72, left hemisphere 33.2
2692 Male, age 74, both hemispheres 32.8
2245 Female, age 91, both hemispheres 32.5
2693 Female, age 94, both hemispheres 32.5
1933 Female, age 85, both hemispheres 30.3
2250 Female, age 67, right hemisphere 29.1
1990 Female, age 91, right hemisphere 28.1
2018 Male, age 76, both hemispheres 27.0
Perirhinal gyrus
nTPM: 31.3
1847 Female, age 91, left hemisphere 33.5
1841 Female, age 85, right hemisphere 33.2
1794 Male, age 80, right hemisphere 30.4
2521 Female, age 94, right hemisphere 30.2
2848 Male, age 76, right hemisphere 29.1
Subiculum
nTPM: 30.4
2619 Male, age 74, both hemispheres 33.6
2438 Female, age 94, left hemisphere 30.8
2042 Male, age 76, both hemispheres 30.6
1977 Female, age 85, both hemispheres 29.6
1901 Male, age 80, both hemispheres 29.0
2729 Female, age 91, right hemisphere 28.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 37.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 37.5
Samples: 197

Max nTPM: 57.6
Min nTPM: 23.6
Std nTPM: 6.7
Median nTPM: 36.4
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 57.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 56.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 55.7
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 54.5
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 53.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 52.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 52.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 51.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 51.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 51.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 50.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 71.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 71.5
FF:10153-102I9 76 years, female 84.4
FF:10169-103B7 60 years, female 58.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 49.0
Samples: 4

Max nTPM: 64.3
Min nTPM: 34.1
Sample A Female 64.3
Sample B Female 48.9
Sample C Male 48.5
Sample D Male 34.1
Entorhinal cortex
nTPM: 34.9
Samples: 4

Max nTPM: 39.8
Min nTPM: 29.5
Sample A Female 39.8
Sample B Female 34.3
Sample C Male 35.8
Sample D Male 29.5
Subiculum
nTPM: 40.5
Samples: 4

Max nTPM: 47.9
Min nTPM: 36.6
Sample A Female 47.9
Sample B Female 36.6
Sample C Male 40.7
Sample D Male 36.8
Ventral hippocampus
nTPM: 45.7
Samples: 4

Max nTPM: 55.0
Min nTPM: 35.1
Sample A Female 45.6
Sample B Female 35.1
Sample C Male 55.0
Sample D Male 47.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 32.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 32.4
Samples: 4

Max nTPM: 35.3
Min nTPM: 30.0
Sample A Male 33.4
Sample B Male 30.8
Sample C Female 30.0
Sample D Female 35.3
Hippocampal formation
nTPM: 25.8
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.0
Sample A Male 28.4
Sample B Male 24.2
Sample C Female 23.0
Sample D Female 27.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.9
532650 Antisense, RP_040825_01_A06, Mouse strain C57BL/6J (56 days, male) 6.1
77910645 Antisense, RP_070208_04_E05, Mouse strain C57BL/6J (56 days, male) 1.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.