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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:7.1 nTPM
HPA:7.1 nTPM
GTEx:34.7 nTPM
FANTOM5:55.7 Scaled Tags Per Million
Pig:25.4 nTPM
Mouse:72.3 nTPM
Allen mouse:1.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA040981
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 7.1
Sample id Sample description nTPM
Hippocampus
nTPM: 6.8
1855 Male, age 76, left hemisphere 7.3
1911 Female, age 85, right hemisphere 7.0
2148 Female, age 91, left hemisphere 7.0
1898 Male, age 80, left hemisphere 6.7
2621 Female, age 67, right hemisphere 6.7
2529 Female, age 94, left hemisphere 6.3
Dentate gyrus
nTPM: 6.9
1927 Female, age 91, both hemispheres 7.4
2246 Female, age 85, both hemispheres 7.1
2528 Male, age 74, both hemispheres 7.1
2531 Female, age 67, both hemispheres 7.0
2010 Male, age 76, both hemispheres 6.4
2530 Female, age 94, left hemisphere 6.4
Entorhinal gyrus
nTPM: 6.5
2613 Female, age 94, left hemisphere 6.9
2764 Male, age 80, right hemisphere 6.7
1938 Female, age 85, left hemisphere 6.6
1787 Male, age 76, left hemisphere 6.5
2686 Male, age 75, right hemisphere 6.4
2117 Female, age 91, right hemisphere 6.2
Hippocampus, CA1
nTPM: 7.1
2045 Male, age 76, both hemispheres 7.9
2082 Female, age 91, right hemisphere 7.4
1873 Female, age 85, both hemispheres 6.8
2749 Male, age 80, left hemisphere 6.8
2527 Male, age 74, both hemispheres 6.7
Hippocampus, CA2
nTPM: 6.4
1963 Male, age 80, left hemisphere 6.6
2113 Female, age 91, right hemisphere 6.6
1940 Female, age 85, left hemisphere 6.3
2249 Male, age 74, both hemispheres 6.3
1892 Male, age 76, both hemispheres 6.2
2437 Female, age 94, left hemisphere 6.1
Hippocampus, CA3
nTPM: 6.9
2137 Male, age 80, left hemisphere 7.4
2620 Female, age 94, left hemisphere 7.2
1867 Male, age 76, both hemispheres 7.0
2861 Female, age 67, both hemispheres 6.8
2436 Male, age 74, both hemispheres 6.6
1891 Female, age 85, both hemispheres 6.4
Parahippocampal cortex
nTPM: 6.7
2693 Female, age 94, both hemispheres 7.5
2692 Male, age 74, both hemispheres 7.2
2622 Female, age 67, right hemisphere 6.9
2018 Male, age 76, both hemispheres 6.7
2250 Female, age 67, right hemisphere 6.7
1990 Female, age 91, right hemisphere 6.6
2532 Female, age 72, left hemisphere 6.6
1850 Male, age 80, both hemispheres 6.4
1933 Female, age 85, both hemispheres 6.4
2245 Female, age 91, both hemispheres 6.3
Perirhinal gyrus
nTPM: 7.0
1794 Male, age 80, right hemisphere 7.5
2848 Male, age 76, right hemisphere 7.4
2521 Female, age 94, right hemisphere 6.8
1841 Female, age 85, right hemisphere 6.7
1847 Female, age 91, left hemisphere 6.5
Subiculum
nTPM: 6.6
2729 Female, age 91, right hemisphere 7.2
1901 Male, age 80, both hemispheres 6.7
1977 Female, age 85, both hemispheres 6.7
2619 Male, age 74, both hemispheres 6.5
2042 Male, age 76, both hemispheres 6.4
2438 Female, age 94, left hemisphere 6.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.7
Samples: 197

Max nTPM: 54.1
Min nTPM: 11.7
Std nTPM: 7.4
Median nTPM: 34.8
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 54.1
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 50.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 50.1
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 49.9
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 49.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 49.4
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 49.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 49.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 49.0
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 48.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 48.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 55.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 55.7
FF:10169-103B7 60 years, female 69.0
FF:10153-102I9 76 years, female 42.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 25.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 25.3
Samples: 4

Max nTPM: 31.3
Min nTPM: 20.4
Sample A Female 31.3
Sample B Female 28.4
Sample C Male 20.4
Sample D Male 21.2
Entorhinal cortex
nTPM: 15.9
Samples: 4

Max nTPM: 17.9
Min nTPM: 13.9
Sample A Female 17.9
Sample B Female 15.3
Sample C Male 16.6
Sample D Male 13.9
Subiculum
nTPM: 18.6
Samples: 4

Max nTPM: 23.6
Min nTPM: 15.7
Sample A Female 23.6
Sample B Female 17.7
Sample C Male 17.4
Sample D Male 15.7
Ventral hippocampus
nTPM: 24.9
Samples: 4

Max nTPM: 29.6
Min nTPM: 19.0
Sample A Female 27.3
Sample B Female 19.0
Sample C Male 29.6
Sample D Male 23.6

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 72.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 70.3
Samples: 4

Max nTPM: 74.1
Min nTPM: 66.9
Sample A Male 66.9
Sample B Male 71.3
Sample C Female 74.1
Sample D Female 68.9
Hippocampal formation
nTPM: 72.3
Samples: 4

Max nTPM: 87.7
Min nTPM: 61.5
Sample A Male 87.7
Sample B Male 72.2
Sample C Female 67.9
Sample D Female 61.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.9
1742 Antisense, RP_040604_01_B07, Mouse strain C57BL/6J (56 days, male) 1.9
1743 Antisense, RP_040604_01_B07, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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