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ST3GAL3
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.0 nTPM
HPA:29.0 nTPM
GTEx:19.5 nTPM
FANTOM5:29.3 Scaled Tags Per Million
Pig:18.0 nTPM
Mouse:29.8 nTPM
Allen mouse:5.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 29.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.0
2586 Male, age 75, left hemisphere 31.6
1827 Male, age 72, unknown 29.4
2019 Male, age 18, unknown 28.8
2219 Male, age 76, both hemispheres 27.5
1830 Male, age 51, unknown 26.9
2666 Male, age 74, left hemisphere 26.8
2411 Female, age 72, unknown 26.7
2828 Female, age 72, unknown 26.6
1833 Male, age 53, unknown 24.1
1870 Female, age 42, unknown 21.5
Dorsal raphe nucleus
nTPM: 22.7
2047 Male, age 72, unknown 24.3
1828 Male, age 53, unknown 23.5
2750 Male, age 76, both hemispheres 23.4
2016 Female, age 72, unknown 21.6
2298 Female, age 72, unknown 20.8
Inferior colliculus
nTPM: 25.6
2849 Male, age 72, unknown 26.5
2097 Female, age 72, unknown 25.7
1848 Female, age 42, unknown 25.5
1890 Male, age 53, unknown 24.6
Median raphe nucleus
nTPM: 23.4
2220 Male, age 76, midline 23.4
Pedunculopontine tegmental nucleus
nTPM: 25.7
2338 Male, age 61, both hemispheres 26.6
1921 Female, age 85, both hemispheres 26.4
2334 Male, age 80, both hemispheres 24.2
Periaquaductal grey, anterior
nTPM: 27.5
2502 Female, age 75, unknown 27.7
1795 Male, age 51, unknown 27.6
1947 Male, age 18, unknown 27.1
Periaquaductal grey, dorsal
nTPM: 24.7
2464 Female, age 72, unknown 26.6
1831 Male, age 72, unknown 25.2
2850 Male, age 76, both hemispheres 23.6
1840 Male, age 53, unknown 23.5
Periaquaductal grey, lateral
nTPM: 24.4
2053 Male, age 18, unknown 25.2
2140 Male, age 76, both hemispheres 24.3
2272 Male, age 74, both hemispheres 23.8
Pretectal area
nTPM: 29.0
1816 Male, age 51, unknown 35.8
1817 Female, age 42, unknown 32.9
2007 Male, age 72, unknown 32.9
1944 Female, age 72, unknown 31.9
1815 Male, age 53, unknown 31.0
2667 Female, age 75, unknown 29.0
2316 Male, age 76, right hemisphere 28.3
2407 Male, age 75, both hemispheres 26.7
2825 Male, age 18, unknown 24.4
2273 Male, age 74, both hemispheres 23.4
2224 Female, age 72, unknown 23.1
Red nucleus
nTPM: 25.5
2584 Male, age 75, left hemisphere 31.2
2785 Male, age 18, unknown 28.6
2588 Male, age 74, left hemisphere 28.5
2823 Male, age 76, right hemisphere 26.5
2503 Female, age 72, unknown 25.1
2725 Female, age 75, unknown 24.8
1904 Male, age 53, unknown 24.5
1954 Female, age 42, unknown 24.2
1865 Male, age 51, unknown 24.1
2227 Male, age 72, unknown 23.2
2769 Male, age 72, unknown 22.9
1821 Female, age 72, unknown 22.0
Substantia nigra
nTPM: 25.6
1941 Male, age 53, unknown 28.8
2583 Male, age 75, right hemisphere 28.1
2665 Male, age 74, both hemispheres 27.7
1889 Female, age 72, unknown 26.8
2590 Female, age 75, unknown 26.1
1916 Female, age 42, unknown 24.8
2409 Female, age 72, unknown 24.4
2241 Male, age 72, unknown 23.8
1851 Male, age 51, unknown 23.1
2699 Male, age 18, unknown 22.8
Superior colliculus
nTPM: 28.1
2664 Male, age 75, both hemispheres 32.8
2087 Female, age 72, unknown 32.7
2261 Male, age 18, unknown 30.0
1895 Male, age 76, right hemisphere 28.1
1796 Male, age 53, unknown 27.9
2668 Female, age 75, unknown 27.3
1839 Male, age 51, unknown 26.3
1913 Female, age 42, unknown 26.2
1995 Male, age 72, unknown 25.4
2587 Male, age 74, left hemisphere 23.8
Ventral tegmental area
nTPM: 24.4
2410 Female, age 72, unknown 26.9
2218 Male, age 76, both hemispheres 25.4
2021 Male, age 53, unknown 24.4
1942 Male, age 51, unknown 24.1
1915 Female, age 42, unknown 23.4
2223 Female, age 72, unknown 22.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 19.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 19.5
Samples: 139

Max nTPM: 45.8
Min nTPM: 7.2
Std nTPM: 6.4
Median nTPM: 19.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 43.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 32.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 31.3
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 31.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 31.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 30.6
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 30.3
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 29.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 29.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 29.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 29.3
FF:10158-103A5 76 years, female 29.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 18.0
Pig sample Sample description nTPM
Midbrain
nTPM: 15.1
Samples: 4

Max nTPM: 24.4
Min nTPM: 9.5
Sample A Female 10.2
Sample B Female 9.5
Sample C Male 24.4
Sample D Male 16.3
Periaqueductal gray
nTPM: 9.0
Samples: 3

Max nTPM: 10.0
Min nTPM: 7.5
Sample B Female 9.5
Sample C Male 10.0
Sample D Male 7.5
Substantia nigra
nTPM: 12.6
Samples: 4

Max nTPM: 15.0
Min nTPM: 9.6
Sample A Female 15.0
Sample B Female 10.6
Sample C Male 15.0
Sample D Male 9.6
Superior colliculi
nTPM: 18.0
Samples: 4

Max nTPM: 23.4
Min nTPM: 13.6
Sample A Female 18.0
Sample B Female 13.6
Sample C Male 23.4
Sample D Male 17.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.8
Samples: 4

Max nTPM: 33.1
Min nTPM: 24.7
Sample A Male 30.4
Sample B Male 24.7
Sample C Female 33.1
Sample D Female 31.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.7
2567 Antisense, RP_040407_02_F03, Mouse strain C57BL/6J (56 days, male) 5.7
2568 Antisense, RP_040407_02_F03, Mouse strain C57BL/6J (56 days, male) 1.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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