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MCF2L
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.1 nTPM
HPA:35.1 nTPM
GTEx:28.7 nTPM
FANTOM5:207.3 Scaled Tags Per Million
Pig:19.8 nTPM
Mouse:50.7 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 15.7
2289 Male, age 61, right hemisphere 29.9
2288 Male, age 75, left hemisphere 23.8
1781 Male, age 74, unknown 21.6
1854 Male, age 80, left hemisphere 14.0
2846 Female, age 79, unknown 12.8
2290 Female, age 72, unknown 10.0
1857 Female, age 85, left hemisphere 7.2
2481 Female, age 94, left hemisphere 6.7
Claustrum
nTPM: 35.1
2645 Female, age 72, unknown 52.5
2568 Male, age 61, both hemispheres 43.9
2491 Male, age 75, both hemispheres 38.8
1956 Male, age 74, unknown 35.3
2284 Female, age 91, both hemispheres 34.1
2196 Female, age 79, unknown 30.8
2292 Female, age 85, both hemispheres 29.6
2392 Female, age 94, both hemispheres 26.2
2198 Male, age 80, both hemispheres 25.0
Globus pallidus, externus
nTPM: 34.7
2567 Female, age 72, unknown 68.0
2646 Male, age 61, right hemisphere 45.3
2772 Female, age 79, unknown 21.0
2395 Male, age 75, both hemispheres 19.8
1996 Male, age 80, right hemisphere 19.3
Globus pallidus, internus
nTPM: 24.8
2566 Female, age 72, unknown 51.9
1818 Male, age 74, unknown 30.8
2483 Female, age 94, right hemisphere 27.8
2037 Male, age 80, right hemisphere 24.8
2111 Female, age 85, right hemisphere 24.2
2778 Female, age 91, both hemispheres 14.0
2287 Male, age 75, right hemisphere 0.1
Nucleus accumbens
nTPM: 14.2
2824 Male, age 61, right hemisphere 21.3
2732 Male, age 80, right hemisphere 19.7
2286 Male, age 75, left hemisphere 16.0
1783 Male, age 74, unknown 14.9
2391 Female, age 94, left hemisphere 12.5
1856 Female, age 91, right hemisphere 10.8
2698 Female, age 72, unknown 9.2
1806 Female, age 85, left hemisphere 8.8
Nucleus basalis of Meynert
nTPM: 30.0
2484 Female, age 94, left hemisphere 45.8
2569 Male, age 61, both hemispheres 43.5
2821 Male, age 75, both hemispheres 16.1
2393 Male, age 80, right hemisphere 14.6
Nucleus of the diagonal band
nTPM: 19.7
2029 Male, age 61, right hemisphere 32.1
2195 Female, age 85, both hemispheres 28.3
2775 Male, age 80, right hemisphere 15.8
1979 Male, age 74, unknown 12.5
1812 Female, age 91, both hemispheres 10.0
Olfactory tubercle
nTPM: 26.9
2856 Male, age 75, right hemisphere 34.6
1998 Female, age 91, both hemispheres 33.0
2487 Female, age 94, left hemisphere 28.3
1846 Male, age 80, right hemisphere 11.7
Putamen
nTPM: 21.3
2647 Male, age 75, left hemisphere 39.5
2489 Female, age 72, unknown 35.8
2466 Female, age 79, unknown 22.6
1829 Male, age 74, unknown 20.2
2482 Female, age 94, left hemisphere 14.3
1838 Male, age 80, right hemisphere 10.1
1937 Female, age 91, right hemisphere 6.8
Septal nuclei
nTPM: 19.2
2059 Female, age 85, both hemispheres 28.1
2394 Male, age 61, left hemisphere 26.4
1960 Male, age 74, unknown 23.2
2009 Female, age 91, both hemispheres 18.3
2199 Male, age 80, right hemisphere 15.0
2031 Female, age 72, unknown 13.0
2629 Female, age 94, right hemisphere 10.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 28.6
Samples: 246

Max nTPM: 77.1
Min nTPM: 12.8
Std nTPM: 8.6
Median nTPM: 28.2
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 77.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 56.5
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 50.8
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 50.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 49.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 47.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 47.0
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 46.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 46.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 46.6
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 46.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 27.2
Samples: 246

Max nTPM: 54.1
Min nTPM: 6.1
Std nTPM: 7.6
Median nTPM: 27.6
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 54.1
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 48.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 48.9
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 45.0
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 44.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 43.0
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 42.2
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 41.2
GTEX-13JUV-0011-R6b-SM-5LZYG 40-49 years, female 40.8
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 40.6
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 39.7
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Brain - Putamen (basal ganglia)
Average nTPM: 28.7
Samples: 205

Max nTPM: 60.7
Min nTPM: 8.7
Std nTPM: 9.1
Median nTPM: 28.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 60.7
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 60.5
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 54.4
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 53.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 50.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 49.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 48.4
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 48.4
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 47.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 46.7
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 45.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 207.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 106.3
FF:10164-103B2 76 years, female 106.3
Globus pallidus
Scaled Tags Per Million: 207.3
FF:10161-103A8 76 years, female 283.6
FF:10175-103C4 60 years, female 131.0
Nucleus accumbens
Scaled Tags Per Million: 100.2
FF:10037-101F1 23-56 years, mixed 100.2
Putamen
Scaled Tags Per Million: 73.8
FF:10176-103C5 60 years, female 73.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 19.8
Pig sample Sample description nTPM
Caudate
nTPM: 19.0
Samples: 4

Max nTPM: 20.2
Min nTPM: 15.8
Sample A Female 15.8
Sample B Female 20.2
Sample C Male 19.9
Sample D Male 20.2
Putamen
nTPM: 17.2
Samples: 4

Max nTPM: 20.9
Min nTPM: 13.5
Sample A Female 13.5
Sample B Female 18.9
Sample C Male 15.3
Sample D Male 20.9
Septum
nTPM: 17.3
Samples: 4

Max nTPM: 19.9
Min nTPM: 12.5
Sample A Female 19.3
Sample B Female 19.9
Sample C Male 17.3
Sample D Male 12.5
Ventral pallidum
nTPM: 19.8
Samples: 4

Max nTPM: 20.7
Min nTPM: 18.8
Sample A Female 18.8
Sample B Female 19.9
Sample C Male 20.7
Sample D Male 19.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.7
Samples: 4

Max nTPM: 57.8
Min nTPM: 44.8
Sample A Male 48.3
Sample B Male 44.8
Sample C Female 57.8
Sample D Female 51.7
Septum
nTPM: 26.7
Samples: 4

Max nTPM: 35.5
Min nTPM: 20.2
Sample A Male 35.5
Sample B Male 20.2
Sample C Female 21.6
Sample D Female 29.6
Ventral forebrain
nTPM: 42.7
Samples: 4

Max nTPM: 51.0
Min nTPM: 31.9
Sample A Male 51.0
Sample B Male 39.1
Sample C Female 31.9
Sample D Female 48.9

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
71789807 Antisense, RP_050921_03_F07, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.2
71789807 Antisense, RP_050921_03_F07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.