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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:392.3 nTPM
HPA:392.3 nTPM
GTEx:355.6 nTPM
FANTOM5:153.8 Scaled Tags Per Million
Pig:46.4 nTPM
Mouse:252.8 nTPM
Allen mouse:13.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 392.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 361.4
2666 Male, age 74, left hemisphere 399.8
2219 Male, age 76, both hemispheres 368.3
1870 Female, age 42, unknown 366.6
2586 Male, age 75, left hemisphere 360.6
1833 Male, age 53, unknown 357.6
2019 Male, age 18, unknown 355.6
2828 Female, age 72, unknown 354.1
1830 Male, age 51, unknown 352.8
1827 Male, age 72, unknown 352.0
2411 Female, age 72, unknown 346.2
Dorsal raphe nucleus
nTPM: 362.9
2047 Male, age 72, unknown 389.8
2750 Male, age 76, both hemispheres 374.0
1828 Male, age 53, unknown 370.7
2298 Female, age 72, unknown 345.2
2016 Female, age 72, unknown 334.8
Inferior colliculus
nTPM: 346.4
2849 Male, age 72, unknown 370.2
1848 Female, age 42, unknown 346.5
1890 Male, age 53, unknown 343.1
2097 Female, age 72, unknown 325.7
Median raphe nucleus
nTPM: 392.3
2220 Male, age 76, midline 392.3
Pedunculopontine tegmental nucleus
nTPM: 380.0
2338 Male, age 61, both hemispheres 401.5
2334 Male, age 80, both hemispheres 389.5
1921 Female, age 85, both hemispheres 349.1
Periaquaductal grey, anterior
nTPM: 350.3
1947 Male, age 18, unknown 351.9
1795 Male, age 51, unknown 350.8
2502 Female, age 75, unknown 348.1
Periaquaductal grey, dorsal
nTPM: 352.4
2850 Male, age 76, both hemispheres 385.3
2464 Female, age 72, unknown 345.5
1840 Male, age 53, unknown 344.6
1831 Male, age 72, unknown 334.4
Periaquaductal grey, lateral
nTPM: 335.9
2140 Male, age 76, both hemispheres 346.7
2272 Male, age 74, both hemispheres 335.3
2053 Male, age 18, unknown 325.7
Pretectal area
nTPM: 352.5
1817 Female, age 42, unknown 377.0
2007 Male, age 72, unknown 362.7
1816 Male, age 51, unknown 360.5
2667 Female, age 75, unknown 359.3
1815 Male, age 53, unknown 356.9
1944 Female, age 72, unknown 352.7
2825 Male, age 18, unknown 351.3
2224 Female, age 72, unknown 348.7
2407 Male, age 75, both hemispheres 346.9
2316 Male, age 76, right hemisphere 332.8
2273 Male, age 74, both hemispheres 328.9
Red nucleus
nTPM: 354.9
2725 Female, age 75, unknown 366.6
2785 Male, age 18, unknown 363.6
1821 Female, age 72, unknown 363.3
1865 Male, age 51, unknown 362.7
2588 Male, age 74, left hemisphere 358.9
2584 Male, age 75, left hemisphere 357.3
2769 Male, age 72, unknown 351.8
2227 Male, age 72, unknown 350.6
1954 Female, age 42, unknown 349.4
2823 Male, age 76, right hemisphere 349.2
1904 Male, age 53, unknown 345.0
2503 Female, age 72, unknown 340.8
Substantia nigra
nTPM: 375.5
1916 Female, age 42, unknown 396.7
1941 Male, age 53, unknown 391.0
2665 Male, age 74, both hemispheres 390.0
2699 Male, age 18, unknown 389.9
1851 Male, age 51, unknown 381.7
2409 Female, age 72, unknown 369.2
1889 Female, age 72, unknown 366.6
2241 Male, age 72, unknown 365.8
2583 Male, age 75, right hemisphere 357.3
2590 Female, age 75, unknown 346.9
Superior colliculus
nTPM: 348.0
2668 Female, age 75, unknown 356.6
2587 Male, age 74, left hemisphere 355.6
1839 Male, age 51, unknown 350.1
2664 Male, age 75, both hemispheres 350.0
1796 Male, age 53, unknown 349.3
1895 Male, age 76, right hemisphere 349.2
2087 Female, age 72, unknown 348.9
2261 Male, age 18, unknown 344.0
1913 Female, age 42, unknown 343.2
1995 Male, age 72, unknown 332.6
Ventral tegmental area
nTPM: 368.6
2223 Female, age 72, unknown 382.8
2218 Male, age 76, both hemispheres 379.0
1915 Female, age 42, unknown 376.0
2410 Female, age 72, unknown 365.4
2021 Male, age 53, unknown 359.5
1942 Male, age 51, unknown 349.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 355.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 355.6
Samples: 139

Max nTPM: 668.0
Min nTPM: 214.7
Std nTPM: 79.4
Median nTPM: 341.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 668.0
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 634.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 561.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 558.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 553.8
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 538.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 538.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 511.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 493.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 489.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 481.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 153.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.8
FF:10158-103A5 76 years, female 153.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.4
Pig sample Sample description nTPM
Midbrain
nTPM: 42.5
Samples: 4

Max nTPM: 58.0
Min nTPM: 31.5
Sample A Female 58.0
Sample B Female 38.1
Sample C Male 42.5
Sample D Male 31.5
Periaqueductal gray
nTPM: 35.1
Samples: 3

Max nTPM: 42.8
Min nTPM: 31.2
Sample B Female 31.3
Sample C Male 42.8
Sample D Male 31.2
Substantia nigra
nTPM: 46.4
Samples: 4

Max nTPM: 55.7
Min nTPM: 38.8
Sample A Female 55.7
Sample B Female 38.8
Sample C Male 51.6
Sample D Male 39.6
Superior colliculi
nTPM: 40.5
Samples: 4

Max nTPM: 45.0
Min nTPM: 35.6
Sample A Female 44.1
Sample B Female 35.6
Sample C Male 45.0
Sample D Male 37.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 252.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 252.8
Samples: 4

Max nTPM: 271.1
Min nTPM: 221.3
Sample A Male 221.3
Sample B Male 271.1
Sample C Female 248.7
Sample D Female 270.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.5
75934915 Antisense, RP_060530_01_E07, Mouse strain C57BL/6J (56 days, male) 17.2
68633113 Antisense, RP_050125_02_D09, Mouse strain C57BL/6J (56 days, male) 9.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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