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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:379.8 nTPM
HPA:379.8 nTPM
GTEx:361.4 nTPM
FANTOM5:130.2 Scaled Tags Per Million
Pig:40.6 nTPM
Mouse:240.1 nTPM
Allen mouse:15.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006872
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 379.8
Sample id Sample description nTPM
Hippocampus
nTPM: 367.2
2621 Female, age 67, right hemisphere 383.1
1898 Male, age 80, left hemisphere 380.7
1855 Male, age 76, left hemisphere 379.6
2148 Female, age 91, left hemisphere 362.6
2529 Female, age 94, left hemisphere 360.6
1911 Female, age 85, right hemisphere 336.6
Dentate gyrus
nTPM: 365.2
2530 Female, age 94, left hemisphere 405.6
2246 Female, age 85, both hemispheres 367.3
2010 Male, age 76, both hemispheres 361.4
2531 Female, age 67, both hemispheres 355.8
1927 Female, age 91, both hemispheres 353.8
2528 Male, age 74, both hemispheres 347.3
Entorhinal gyrus
nTPM: 363.9
2613 Female, age 94, left hemisphere 379.9
2764 Male, age 80, right hemisphere 373.7
1787 Male, age 76, left hemisphere 363.0
1938 Female, age 85, left hemisphere 359.9
2686 Male, age 75, right hemisphere 359.6
2117 Female, age 91, right hemisphere 347.7
Hippocampus, CA1
nTPM: 360.2
2749 Male, age 80, left hemisphere 380.6
1873 Female, age 85, both hemispheres 371.8
2527 Male, age 74, both hemispheres 355.8
2045 Male, age 76, both hemispheres 351.3
2082 Female, age 91, right hemisphere 341.7
Hippocampus, CA2
nTPM: 360.1
1892 Male, age 76, both hemispheres 387.1
2437 Female, age 94, left hemisphere 380.3
1963 Male, age 80, left hemisphere 362.7
1940 Female, age 85, left hemisphere 352.0
2249 Male, age 74, both hemispheres 340.2
2113 Female, age 91, right hemisphere 338.1
Hippocampus, CA3
nTPM: 363.6
2861 Female, age 67, both hemispheres 382.6
2620 Female, age 94, left hemisphere 374.6
1867 Male, age 76, both hemispheres 367.3
2137 Male, age 80, left hemisphere 361.2
2436 Male, age 74, both hemispheres 350.9
1891 Female, age 85, both hemispheres 345.1
Parahippocampal cortex
nTPM: 370.5
2532 Female, age 72, left hemisphere 389.6
1850 Male, age 80, both hemispheres 384.2
2245 Female, age 91, both hemispheres 382.7
2693 Female, age 94, both hemispheres 376.2
2692 Male, age 74, both hemispheres 375.2
2622 Female, age 67, right hemisphere 373.4
1990 Female, age 91, right hemisphere 362.1
1933 Female, age 85, both hemispheres 356.5
2250 Female, age 67, right hemisphere 355.2
2018 Male, age 76, both hemispheres 349.7
Perirhinal gyrus
nTPM: 379.8
1794 Male, age 80, right hemisphere 388.1
1841 Female, age 85, right hemisphere 384.0
2848 Male, age 76, right hemisphere 379.1
1847 Female, age 91, left hemisphere 377.0
2521 Female, age 94, right hemisphere 371.1
Subiculum
nTPM: 360.6
2438 Female, age 94, left hemisphere 393.9
2619 Male, age 74, both hemispheres 359.5
1901 Male, age 80, both hemispheres 358.3
2042 Male, age 76, both hemispheres 358.3
1977 Female, age 85, both hemispheres 357.8
2729 Female, age 91, right hemisphere 336.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 361.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 361.4
Samples: 197

Max nTPM: 725.6
Min nTPM: 193.2
Std nTPM: 101.2
Median nTPM: 348.0
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 725.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 724.5
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 681.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 633.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 620.0
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 606.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 587.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 582.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 555.3
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 551.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 550.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 130.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 130.2
FF:10169-103B7 60 years, female 133.9
FF:10153-102I9 76 years, female 126.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 40.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 40.6
Samples: 4

Max nTPM: 53.5
Min nTPM: 31.3
Sample A Female 53.5
Sample B Female 42.2
Sample C Male 35.3
Sample D Male 31.3
Entorhinal cortex
nTPM: 27.8
Samples: 4

Max nTPM: 32.0
Min nTPM: 23.3
Sample A Female 32.0
Sample B Female 26.2
Sample C Male 29.8
Sample D Male 23.3
Subiculum
nTPM: 36.0
Samples: 4

Max nTPM: 42.4
Min nTPM: 33.0
Sample A Female 42.4
Sample B Female 34.0
Sample C Male 33.0
Sample D Male 34.7
Ventral hippocampus
nTPM: 37.4
Samples: 4

Max nTPM: 47.3
Min nTPM: 23.4
Sample A Female 37.7
Sample B Female 23.4
Sample C Male 47.3
Sample D Male 41.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 240.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 194.4
Samples: 4

Max nTPM: 219.4
Min nTPM: 163.6
Sample A Male 188.5
Sample B Male 163.6
Sample C Female 206.0
Sample D Female 219.4
Hippocampal formation
nTPM: 240.1
Samples: 4

Max nTPM: 281.0
Min nTPM: 208.1
Sample A Male 229.8
Sample B Male 208.1
Sample C Female 281.0
Sample D Female 241.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 15.9
75934915 Antisense, RP_060530_01_E07, Mouse strain C57BL/6J (56 days, male) 18.8
68633113 Antisense, RP_050125_02_D09, Mouse strain C57BL/6J (56 days, male) 13.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.