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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:36.4 nTPM
HPA:36.4 nTPM
GTEx:42.0 nTPM
FANTOM5:80.7 Scaled Tags Per Million
Mouse:80.6 nTPM
Allen mouse:9.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041436
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Hippocampus
nTPM: 35.2
2529 Female, age 94, left hemisphere 37.1
1898 Male, age 80, left hemisphere 36.7
1911 Female, age 85, right hemisphere 35.3
2148 Female, age 91, left hemisphere 34.6
1855 Male, age 76, left hemisphere 34.0
2621 Female, age 67, right hemisphere 33.5
Dentate gyrus
nTPM: 35.5
2531 Female, age 67, both hemispheres 37.0
1927 Female, age 91, both hemispheres 36.9
2010 Male, age 76, both hemispheres 35.8
2530 Female, age 94, left hemisphere 35.3
2246 Female, age 85, both hemispheres 34.7
2528 Male, age 74, both hemispheres 33.2
Entorhinal gyrus
nTPM: 35.7
1938 Female, age 85, left hemisphere 37.2
1787 Male, age 76, left hemisphere 36.6
2686 Male, age 75, right hemisphere 35.8
2764 Male, age 80, right hemisphere 35.7
2613 Female, age 94, left hemisphere 34.9
2117 Female, age 91, right hemisphere 34.3
Hippocampus, CA1
nTPM: 35.9
2749 Male, age 80, left hemisphere 39.7
1873 Female, age 85, both hemispheres 37.5
2527 Male, age 74, both hemispheres 35.3
2045 Male, age 76, both hemispheres 34.1
2082 Female, age 91, right hemisphere 32.8
Hippocampus, CA2
nTPM: 35.1
1892 Male, age 76, both hemispheres 38.1
1963 Male, age 80, left hemisphere 38.0
2437 Female, age 94, left hemisphere 34.4
1940 Female, age 85, left hemisphere 34.0
2113 Female, age 91, right hemisphere 33.0
2249 Male, age 74, both hemispheres 32.9
Hippocampus, CA3
nTPM: 35.6
2137 Male, age 80, left hemisphere 38.3
1891 Female, age 85, both hemispheres 37.6
1867 Male, age 76, both hemispheres 37.1
2861 Female, age 67, both hemispheres 34.6
2620 Female, age 94, left hemisphere 34.2
2436 Male, age 74, both hemispheres 31.7
Parahippocampal cortex
nTPM: 35.2
1850 Male, age 80, both hemispheres 38.8
1933 Female, age 85, both hemispheres 36.5
2018 Male, age 76, both hemispheres 35.6
2693 Female, age 94, both hemispheres 35.4
2532 Female, age 72, left hemisphere 35.3
1990 Female, age 91, right hemisphere 35.2
2692 Male, age 74, both hemispheres 34.6
2245 Female, age 91, both hemispheres 34.2
2250 Female, age 67, right hemisphere 34.0
2622 Female, age 67, right hemisphere 32.6
Perirhinal gyrus
nTPM: 36.4
1841 Female, age 85, right hemisphere 38.1
1794 Male, age 80, right hemisphere 37.1
2848 Male, age 76, right hemisphere 36.7
1847 Female, age 91, left hemisphere 35.8
2521 Female, age 94, right hemisphere 34.1
Subiculum
nTPM: 35.4
1901 Male, age 80, both hemispheres 38.0
2438 Female, age 94, left hemisphere 37.9
1977 Female, age 85, both hemispheres 35.4
2042 Male, age 76, both hemispheres 35.0
2729 Female, age 91, right hemisphere 33.4
2619 Male, age 74, both hemispheres 32.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 42.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 42.0
Samples: 197

Max nTPM: 59.0
Min nTPM: 31.1
Std nTPM: 4.9
Median nTPM: 41.3
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 59.0
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 57.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 54.6
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 54.1
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 53.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 52.1
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 51.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 51.6
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 51.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 51.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 51.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 80.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 80.7
FF:10169-103B7 60 years, female 92.0
FF:10153-102I9 76 years, female 69.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 80.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 71.9
Samples: 4

Max nTPM: 78.5
Min nTPM: 63.6
Sample A Male 70.9
Sample B Male 78.5
Sample C Female 74.4
Sample D Female 63.6
Hippocampal formation
nTPM: 80.6
Samples: 4

Max nTPM: 91.2
Min nTPM: 73.8
Sample A Male 91.2
Sample B Male 77.2
Sample C Female 80.3
Sample D Female 73.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.7
69817061 Antisense, RP_050510_02_E08, Mouse strain C57BL/6J (56 days, male) 9.7

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.