ABOUTMENU
HELP
NEWS
THRA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:172.1 nTPM
HPA:172.1 nTPM
GTEx:169.7 nTPM
FANTOM5:224.8 Scaled Tags Per Million
Pig:94.3 nTPM
Mouse:382.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 172.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 163.0
2586 Male, age 75, left hemisphere 203.5
2828 Female, age 72, unknown 180.9
2666 Male, age 74, left hemisphere 169.8
1827 Male, age 72, unknown 167.0
1833 Male, age 53, unknown 159.6
1870 Female, age 42, unknown 159.2
2411 Female, age 72, unknown 158.3
1830 Male, age 51, unknown 153.3
2219 Male, age 76, both hemispheres 151.1
2019 Male, age 18, unknown 127.2
Dorsal raphe nucleus
nTPM: 161.1
2047 Male, age 72, unknown 168.4
2016 Female, age 72, unknown 166.8
2298 Female, age 72, unknown 164.0
1828 Male, age 53, unknown 157.6
2750 Male, age 76, both hemispheres 148.6
Inferior colliculus
nTPM: 158.3
2849 Male, age 72, unknown 175.4
1848 Female, age 42, unknown 156.6
1890 Male, age 53, unknown 151.5
2097 Female, age 72, unknown 149.6
Median raphe nucleus
nTPM: 149.3
2220 Male, age 76, midline 149.3
Pedunculopontine tegmental nucleus
nTPM: 137.8
1921 Female, age 85, both hemispheres 152.6
2334 Male, age 80, both hemispheres 142.6
2338 Male, age 61, both hemispheres 118.3
Periaquaductal grey, anterior
nTPM: 172.1
1795 Male, age 51, unknown 176.6
1947 Male, age 18, unknown 173.6
2502 Female, age 75, unknown 166.1
Periaquaductal grey, dorsal
nTPM: 164.5
1840 Male, age 53, unknown 181.2
1831 Male, age 72, unknown 162.9
2464 Female, age 72, unknown 157.8
2850 Male, age 76, both hemispheres 156.0
Periaquaductal grey, lateral
nTPM: 156.4
2053 Male, age 18, unknown 172.5
2140 Male, age 76, both hemispheres 154.0
2272 Male, age 74, both hemispheres 142.6
Pretectal area
nTPM: 155.6
2825 Male, age 18, unknown 185.2
2407 Male, age 75, both hemispheres 176.2
2667 Female, age 75, unknown 166.2
2224 Female, age 72, unknown 159.6
2273 Male, age 74, both hemispheres 153.1
2316 Male, age 76, right hemisphere 151.5
1816 Male, age 51, unknown 149.0
1944 Female, age 72, unknown 147.8
1815 Male, age 53, unknown 146.8
1817 Female, age 42, unknown 141.5
2007 Male, age 72, unknown 134.7
Red nucleus
nTPM: 147.1
2584 Male, age 75, left hemisphere 158.5
2503 Female, age 72, unknown 156.7
2588 Male, age 74, left hemisphere 155.5
2725 Female, age 75, unknown 154.3
2227 Male, age 72, unknown 151.1
2769 Male, age 72, unknown 151.1
1821 Female, age 72, unknown 145.8
1904 Male, age 53, unknown 143.0
1954 Female, age 42, unknown 140.3
1865 Male, age 51, unknown 138.4
2823 Male, age 76, right hemisphere 136.4
2785 Male, age 18, unknown 134.4
Substantia nigra
nTPM: 155.7
2699 Male, age 18, unknown 174.6
2583 Male, age 75, right hemisphere 171.4
1851 Male, age 51, unknown 164.2
2665 Male, age 74, both hemispheres 162.2
1916 Female, age 42, unknown 154.7
2590 Female, age 75, unknown 153.2
1941 Male, age 53, unknown 145.6
1889 Female, age 72, unknown 145.3
2241 Male, age 72, unknown 144.0
2409 Female, age 72, unknown 142.0
Superior colliculus
nTPM: 163.8
2664 Male, age 75, both hemispheres 221.6
1796 Male, age 53, unknown 174.4
1839 Male, age 51, unknown 165.9
1995 Male, age 72, unknown 159.9
1913 Female, age 42, unknown 159.5
2261 Male, age 18, unknown 155.5
2587 Male, age 74, left hemisphere 155.3
2668 Female, age 75, unknown 149.6
2087 Female, age 72, unknown 149.2
1895 Male, age 76, right hemisphere 147.4
Ventral tegmental area
nTPM: 160.8
2223 Female, age 72, unknown 170.7
2021 Male, age 53, unknown 168.7
1942 Male, age 51, unknown 167.7
1915 Female, age 42, unknown 166.6
2410 Female, age 72, unknown 153.3
2218 Male, age 76, both hemispheres 138.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 169.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.7
Samples: 139

Max nTPM: 400.5
Min nTPM: 82.6
Std nTPM: 50.7
Median nTPM: 160.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 400.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 369.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 354.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 310.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 299.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 274.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 262.9
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 258.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 254.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 250.1
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 243.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 224.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 224.8
FF:10158-103A5 76 years, female 224.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 94.3
Pig sample Sample description nTPM
Midbrain
nTPM: 91.6
Samples: 4

Max nTPM: 116.5
Min nTPM: 66.8
Sample A Female 116.5
Sample B Female 90.9
Sample C Male 66.8
Sample D Male 92.1
Periaqueductal gray
nTPM: 94.3
Samples: 3

Max nTPM: 98.7
Min nTPM: 88.0
Sample B Female 96.2
Sample C Male 98.7
Sample D Male 88.0
Substantia nigra
nTPM: 90.7
Samples: 4

Max nTPM: 95.9
Min nTPM: 80.6
Sample A Female 95.8
Sample B Female 80.6
Sample C Male 95.9
Sample D Male 90.6
Superior colliculi
nTPM: 77.3
Samples: 4

Max nTPM: 94.8
Min nTPM: 60.8
Sample A Female 94.8
Sample B Female 60.8
Sample C Male 62.9
Sample D Male 90.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 382.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 382.2
Samples: 4

Max nTPM: 391.1
Min nTPM: 369.8
Sample A Male 391.1
Sample B Male 383.8
Sample C Female 369.8
Sample D Female 383.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
79912542 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 0.2
79904620 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 0.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.