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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:189.7 nTPM
HPA:189.7 nTPM
GTEx:203.0 nTPM
FANTOM5:338.0 Scaled Tags Per Million
Pig:141.6 nTPM
Mouse:812.3 nTPM
Allen mouse:1.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA009654Antibody CAB023349
Glial cells LowNot detected
Neuronal cells LowLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 189.7
Sample id Sample description nTPM
Hippocampus
nTPM: 182.9
1855 Male, age 76, left hemisphere 192.5
2148 Female, age 91, left hemisphere 191.3
1898 Male, age 80, left hemisphere 185.1
2529 Female, age 94, left hemisphere 183.1
2621 Female, age 67, right hemisphere 180.1
1911 Female, age 85, right hemisphere 165.6
Dentate gyrus
nTPM: 186.7
2531 Female, age 67, both hemispheres 205.9
2010 Male, age 76, both hemispheres 188.9
2246 Female, age 85, both hemispheres 188.4
2528 Male, age 74, both hemispheres 185.0
2530 Female, age 94, left hemisphere 181.2
1927 Female, age 91, both hemispheres 171.1
Entorhinal gyrus
nTPM: 186.9
2764 Male, age 80, right hemisphere 198.9
2117 Female, age 91, right hemisphere 187.1
2686 Male, age 75, right hemisphere 187.0
1938 Female, age 85, left hemisphere 184.9
2613 Female, age 94, left hemisphere 183.2
1787 Male, age 76, left hemisphere 180.3
Hippocampus, CA1
nTPM: 185.2
2045 Male, age 76, both hemispheres 219.1
1873 Female, age 85, both hemispheres 187.3
2082 Female, age 91, right hemisphere 179.9
2527 Male, age 74, both hemispheres 173.2
2749 Male, age 80, left hemisphere 166.2
Hippocampus, CA2
nTPM: 169.9
1892 Male, age 76, both hemispheres 180.9
1963 Male, age 80, left hemisphere 178.7
2113 Female, age 91, right hemisphere 175.1
1940 Female, age 85, left hemisphere 166.1
2437 Female, age 94, left hemisphere 161.4
2249 Male, age 74, both hemispheres 157.4
Hippocampus, CA3
nTPM: 180.9
2861 Female, age 67, both hemispheres 225.1
2620 Female, age 94, left hemisphere 218.2
1891 Female, age 85, both hemispheres 168.2
1867 Male, age 76, both hemispheres 166.6
2137 Male, age 80, left hemisphere 160.2
2436 Male, age 74, both hemispheres 147.2
Parahippocampal cortex
nTPM: 175.8
2622 Female, age 67, right hemisphere 196.8
1850 Male, age 80, both hemispheres 186.1
1933 Female, age 85, both hemispheres 182.1
2532 Female, age 72, left hemisphere 181.5
2018 Male, age 76, both hemispheres 177.2
2692 Male, age 74, both hemispheres 177.0
2245 Female, age 91, both hemispheres 167.4
2693 Female, age 94, both hemispheres 165.1
1990 Female, age 91, right hemisphere 162.9
2250 Female, age 67, right hemisphere 162.2
Perirhinal gyrus
nTPM: 189.7
2848 Male, age 76, right hemisphere 206.4
1794 Male, age 80, right hemisphere 202.7
1841 Female, age 85, right hemisphere 184.1
1847 Female, age 91, left hemisphere 179.2
2521 Female, age 94, right hemisphere 176.1
Subiculum
nTPM: 169.9
2729 Female, age 91, right hemisphere 187.7
1977 Female, age 85, both hemispheres 180.7
2619 Male, age 74, both hemispheres 171.5
2042 Male, age 76, both hemispheres 162.2
2438 Female, age 94, left hemisphere 159.9
1901 Male, age 80, both hemispheres 157.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 203.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 203.0
Samples: 197

Max nTPM: 414.3
Min nTPM: 39.5
Std nTPM: 57.2
Median nTPM: 197.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 414.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 385.9
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 382.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 366.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 319.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 312.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 307.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 307.6
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 298.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 297.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 296.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 338.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 338.0
FF:10153-102I9 76 years, female 365.2
FF:10169-103B7 60 years, female 310.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 141.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 121.8
Samples: 4

Max nTPM: 148.0
Min nTPM: 93.6
Sample A Female 148.0
Sample B Female 141.5
Sample C Male 104.2
Sample D Male 93.6
Entorhinal cortex
nTPM: 104.8
Samples: 4

Max nTPM: 125.9
Min nTPM: 93.3
Sample A Female 104.0
Sample B Female 96.0
Sample C Male 125.9
Sample D Male 93.3
Subiculum
nTPM: 124.4
Samples: 4

Max nTPM: 151.0
Min nTPM: 96.7
Sample A Female 151.0
Sample B Female 122.8
Sample C Male 127.2
Sample D Male 96.7
Ventral hippocampus
nTPM: 141.6
Samples: 4

Max nTPM: 181.2
Min nTPM: 119.1
Sample A Female 127.1
Sample B Female 119.1
Sample C Male 181.2
Sample D Male 139.0

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 812.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 738.1
Samples: 4

Max nTPM: 811.7
Min nTPM: 658.2
Sample A Male 694.8
Sample B Male 658.2
Sample C Female 787.7
Sample D Female 811.7
Hippocampal formation
nTPM: 812.3
Samples: 4

Max nTPM: 858.7
Min nTPM: 784.6
Sample A Male 858.7
Sample B Male 793.8
Sample C Female 812.1
Sample D Female 784.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.4
79912542 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 1.4
79904620 Antisense, RP_071218_03_E05, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.