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NR1D1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:24.9 nTPM
HPA:24.9 nTPM
GTEx:21.0 nTPM
FANTOM5:63.7 Scaled Tags Per Million
Pig:31.3 nTPM
Mouse:67.3 nTPM
Allen mouse:4.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007935
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.9
Sample id Sample description nTPM
Hippocampus
nTPM: 15.4
2621 Female, age 67, right hemisphere 18.7
2148 Female, age 91, left hemisphere 17.7
2529 Female, age 94, left hemisphere 17.0
1855 Male, age 76, left hemisphere 13.6
1898 Male, age 80, left hemisphere 12.7
1911 Female, age 85, right hemisphere 12.7
Dentate gyrus
nTPM: 14.8
2246 Female, age 85, both hemispheres 18.5
2531 Female, age 67, both hemispheres 17.8
2528 Male, age 74, both hemispheres 16.7
2530 Female, age 94, left hemisphere 15.1
1927 Female, age 91, both hemispheres 13.2
2010 Male, age 76, both hemispheres 7.5
Entorhinal gyrus
nTPM: 20.7
2686 Male, age 75, right hemisphere 28.7
1787 Male, age 76, left hemisphere 22.0
2764 Male, age 80, right hemisphere 21.6
1938 Female, age 85, left hemisphere 21.1
2613 Female, age 94, left hemisphere 15.5
2117 Female, age 91, right hemisphere 15.4
Hippocampus, CA1
nTPM: 14.6
2527 Male, age 74, both hemispheres 24.3
2082 Female, age 91, right hemisphere 16.9
1873 Female, age 85, both hemispheres 11.7
2045 Male, age 76, both hemispheres 11.6
2749 Male, age 80, left hemisphere 8.5
Hippocampus, CA2
nTPM: 14.6
1940 Female, age 85, left hemisphere 19.8
2249 Male, age 74, both hemispheres 17.0
2437 Female, age 94, left hemisphere 16.0
2113 Female, age 91, right hemisphere 15.5
1892 Male, age 76, both hemispheres 9.9
1963 Male, age 80, left hemisphere 9.8
Hippocampus, CA3
nTPM: 15.7
2620 Female, age 94, left hemisphere 22.7
2861 Female, age 67, both hemispheres 22.5
2436 Male, age 74, both hemispheres 18.1
1891 Female, age 85, both hemispheres 12.4
1867 Male, age 76, both hemispheres 9.5
2137 Male, age 80, left hemisphere 8.8
Parahippocampal cortex
nTPM: 24.9
2622 Female, age 67, right hemisphere 37.6
2245 Female, age 91, both hemispheres 27.5
2532 Female, age 72, left hemisphere 27.1
2692 Male, age 74, both hemispheres 26.1
1933 Female, age 85, both hemispheres 23.3
2250 Female, age 67, right hemisphere 23.1
2693 Female, age 94, both hemispheres 22.2
1850 Male, age 80, both hemispheres 21.2
2018 Male, age 76, both hemispheres 21.0
1990 Female, age 91, right hemisphere 19.7
Perirhinal gyrus
nTPM: 23.0
1841 Female, age 85, right hemisphere 30.8
1794 Male, age 80, right hemisphere 26.1
2848 Male, age 76, right hemisphere 23.5
1847 Female, age 91, left hemisphere 20.7
2521 Female, age 94, right hemisphere 14.0
Subiculum
nTPM: 16.4
2619 Male, age 74, both hemispheres 27.1
2438 Female, age 94, left hemisphere 17.5
1977 Female, age 85, both hemispheres 17.1
2729 Female, age 91, right hemisphere 13.3
2042 Male, age 76, both hemispheres 12.1
1901 Male, age 80, both hemispheres 11.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 21.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 21.0
Samples: 197

Max nTPM: 60.4
Min nTPM: 5.9
Std nTPM: 9.9
Median nTPM: 19.3
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 60.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 59.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 59.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 49.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 46.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 42.3
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 41.1
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 40.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 40.1
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 39.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 39.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 63.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 63.7
FF:10153-102I9 76 years, female 83.6
FF:10169-103B7 60 years, female 43.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 31.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 26.1
Samples: 4

Max nTPM: 30.2
Min nTPM: 21.5
Sample A Female 29.2
Sample B Female 21.5
Sample C Male 30.2
Sample D Male 23.5
Entorhinal cortex
nTPM: 31.4
Samples: 4

Max nTPM: 36.5
Min nTPM: 24.2
Sample A Female 36.5
Sample B Female 24.2
Sample C Male 34.6
Sample D Male 30.1
Subiculum
nTPM: 24.9
Samples: 4

Max nTPM: 32.6
Min nTPM: 17.9
Sample A Female 32.6
Sample B Female 17.9
Sample C Male 30.1
Sample D Male 18.9
Ventral hippocampus
nTPM: 26.0
Samples: 4

Max nTPM: 39.4
Min nTPM: 15.6
Sample A Female 20.2
Sample B Female 15.6
Sample C Male 39.4
Sample D Male 28.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 67.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 67.3
Samples: 4

Max nTPM: 80.7
Min nTPM: 48.9
Sample A Male 80.7
Sample B Male 76.7
Sample C Female 48.9
Sample D Female 62.8
Hippocampal formation
nTPM: 54.7
Samples: 4

Max nTPM: 59.0
Min nTPM: 50.2
Sample A Male 59.0
Sample B Male 58.3
Sample C Female 50.2
Sample D Female 51.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.1
1243 Antisense, RP_040407_02_E08, Mouse strain C57BL/6J (56 days, male) 4.1
1244 Antisense, RP_040407_02_E08, Mouse strain C57BL/6J (56 days, male) 0.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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