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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.1 nTPM
HPA:7.1 nTPM
GTEx:11.6 nTPM
FANTOM5:10.3 Scaled Tags Per Million
Pig:13.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 7.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.9
2219 Male, age 76, both hemispheres 6.4
2411 Female, age 72, unknown 6.2
2666 Male, age 74, left hemisphere 6.1
2828 Female, age 72, unknown 6.1
2586 Male, age 75, left hemisphere 5.9
1870 Female, age 42, unknown 5.8
1827 Male, age 72, unknown 5.7
1830 Male, age 51, unknown 5.7
2019 Male, age 18, unknown 5.6
1833 Male, age 53, unknown 5.5
Dorsal raphe nucleus
nTPM: 7.0
2298 Female, age 72, unknown 8.4
2047 Male, age 72, unknown 8.0
2750 Male, age 76, both hemispheres 6.9
1828 Male, age 53, unknown 6.3
2016 Female, age 72, unknown 5.7
Inferior colliculus
nTPM: 5.6
2097 Female, age 72, unknown 6.8
1890 Male, age 53, unknown 5.6
2849 Male, age 72, unknown 5.0
1848 Female, age 42, unknown 4.9
Median raphe nucleus
nTPM: 6.7
2220 Male, age 76, midline 6.7
Pedunculopontine tegmental nucleus
nTPM: 7.0
2334 Male, age 80, both hemispheres 8.7
1921 Female, age 85, both hemispheres 6.4
2338 Male, age 61, both hemispheres 5.8
Periaquaductal grey, anterior
nTPM: 6.5
1795 Male, age 51, unknown 7.0
1947 Male, age 18, unknown 6.5
2502 Female, age 75, unknown 6.0
Periaquaductal grey, dorsal
nTPM: 5.7
1840 Male, age 53, unknown 6.2
2850 Male, age 76, both hemispheres 6.1
1831 Male, age 72, unknown 5.2
2464 Female, age 72, unknown 5.2
Periaquaductal grey, lateral
nTPM: 6.0
2272 Male, age 74, both hemispheres 6.4
2140 Male, age 76, both hemispheres 6.0
2053 Male, age 18, unknown 5.6
Pretectal area
nTPM: 6.0
1816 Male, age 51, unknown 6.8
2007 Male, age 72, unknown 6.6
2224 Female, age 72, unknown 6.4
2667 Female, age 75, unknown 6.4
1944 Female, age 72, unknown 6.3
1817 Female, age 42, unknown 6.2
2316 Male, age 76, right hemisphere 5.8
1815 Male, age 53, unknown 5.7
2825 Male, age 18, unknown 5.7
2273 Male, age 74, both hemispheres 5.6
2407 Male, age 75, both hemispheres 5.0
Red nucleus
nTPM: 5.8
2588 Male, age 74, left hemisphere 7.3
2584 Male, age 75, left hemisphere 6.1
2769 Male, age 72, unknown 6.1
2725 Female, age 75, unknown 6.0
1821 Female, age 72, unknown 5.9
2227 Male, age 72, unknown 5.8
2785 Male, age 18, unknown 5.6
1904 Male, age 53, unknown 5.5
2503 Female, age 72, unknown 5.5
2823 Male, age 76, right hemisphere 5.5
1954 Female, age 42, unknown 5.4
1865 Male, age 51, unknown 5.3
Substantia nigra
nTPM: 7.1
1916 Female, age 42, unknown 10.6
2241 Male, age 72, unknown 8.4
1851 Male, age 51, unknown 8.2
2699 Male, age 18, unknown 7.1
1941 Male, age 53, unknown 6.7
2665 Male, age 74, both hemispheres 6.4
2590 Female, age 75, unknown 6.2
1889 Female, age 72, unknown 6.1
2409 Female, age 72, unknown 5.8
2583 Male, age 75, right hemisphere 5.8
Superior colliculus
nTPM: 5.7
1796 Male, age 53, unknown 7.2
2261 Male, age 18, unknown 6.8
2668 Female, age 75, unknown 6.1
2087 Female, age 72, unknown 6.0
1895 Male, age 76, right hemisphere 5.3
2587 Male, age 74, left hemisphere 5.3
1839 Male, age 51, unknown 5.1
1913 Female, age 42, unknown 5.1
2664 Male, age 75, both hemispheres 5.1
1995 Male, age 72, unknown 4.7
Ventral tegmental area
nTPM: 7.1
1915 Female, age 42, unknown 8.3
2218 Male, age 76, both hemispheres 7.5
2410 Female, age 72, unknown 7.4
2021 Male, age 53, unknown 6.6
2223 Female, age 72, unknown 6.6
1942 Male, age 51, unknown 6.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 23.0
Min nTPM: 4.6
Std nTPM: 3.7
Median nTPM: 11.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 23.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 22.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 22.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 21.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 20.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 20.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 19.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 18.8
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 18.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 18.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.3
FF:10158-103A5 76 years, female 10.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 13.2
Pig sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 13.5
Min nTPM: 8.5
Sample A Female 13.4
Sample B Female 13.5
Sample C Male 13.1
Sample D Male 8.5
Periaqueductal gray
nTPM: 12.3
Samples: 3

Max nTPM: 14.0
Min nTPM: 11.5
Sample B Female 11.5
Sample C Male 14.0
Sample D Male 11.5
Substantia nigra
nTPM: 13.2
Samples: 4

Max nTPM: 17.7
Min nTPM: 7.2
Sample A Female 17.7
Sample B Female 12.3
Sample C Male 15.7
Sample D Male 7.2
Superior colliculi
nTPM: 11.7
Samples: 4

Max nTPM: 13.9
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 11.8
Sample C Male 13.9
Sample D Male 10.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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