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IFI6
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni
Consensus:126.4 nTPM
HPA:126.4 nTPM
GTEx:164.9 nTPM
FANTOM5:142.4 Scaled Tags Per Million
Pig:17.7 nTPM

HIPPOCAMPUS - Antibody stainingi
Antibody HPA005543
Glial cells Low
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 126.4
Sample id Sample description nTPM
Hippocampus
nTPM: 123.7
2148 Female, age 91, left hemisphere 148.6
1898 Male, age 80, left hemisphere 137.2
1855 Male, age 76, left hemisphere 123.3
2529 Female, age 94, left hemisphere 123.3
2621 Female, age 67, right hemisphere 111.0
1911 Female, age 85, right hemisphere 98.9
Dentate gyrus
nTPM: 124.2
1927 Female, age 91, both hemispheres 144.7
2530 Female, age 94, left hemisphere 126.9
2010 Male, age 76, both hemispheres 126.1
2531 Female, age 67, both hemispheres 123.3
2528 Male, age 74, both hemispheres 114.2
2246 Female, age 85, both hemispheres 109.7
Entorhinal gyrus
nTPM: 115.3
2764 Male, age 80, right hemisphere 147.9
2117 Female, age 91, right hemisphere 123.4
1787 Male, age 76, left hemisphere 116.8
2686 Male, age 75, right hemisphere 111.3
2613 Female, age 94, left hemisphere 96.6
1938 Female, age 85, left hemisphere 96.0
Hippocampus, CA1
nTPM: 126.4
2045 Male, age 76, both hemispheres 159.6
1873 Female, age 85, both hemispheres 125.8
2749 Male, age 80, left hemisphere 122.8
2082 Female, age 91, right hemisphere 121.1
2527 Male, age 74, both hemispheres 102.5
Hippocampus, CA2
nTPM: 121.2
1963 Male, age 80, left hemisphere 134.4
2249 Male, age 74, both hemispheres 130.1
1892 Male, age 76, both hemispheres 124.4
2437 Female, age 94, left hemisphere 119.6
2113 Female, age 91, right hemisphere 112.3
1940 Female, age 85, left hemisphere 106.4
Hippocampus, CA3
nTPM: 115.6
2861 Female, age 67, both hemispheres 131.6
2620 Female, age 94, left hemisphere 123.0
1867 Male, age 76, both hemispheres 122.6
2436 Male, age 74, both hemispheres 109.6
2137 Male, age 80, left hemisphere 105.7
1891 Female, age 85, both hemispheres 101.1
Parahippocampal cortex
nTPM: 105.8
2018 Male, age 76, both hemispheres 120.3
1850 Male, age 80, both hemispheres 115.1
2245 Female, age 91, both hemispheres 111.2
1990 Female, age 91, right hemisphere 108.0
2532 Female, age 72, left hemisphere 107.5
1933 Female, age 85, both hemispheres 103.7
2622 Female, age 67, right hemisphere 102.3
2250 Female, age 67, right hemisphere 102.0
2692 Male, age 74, both hemispheres 96.6
2693 Female, age 94, both hemispheres 91.1
Perirhinal gyrus
nTPM: 111.2
2848 Male, age 76, right hemisphere 123.8
1794 Male, age 80, right hemisphere 119.8
1847 Female, age 91, left hemisphere 110.2
2521 Female, age 94, right hemisphere 101.4
1841 Female, age 85, right hemisphere 100.7
Subiculum
nTPM: 106.7
2729 Female, age 91, right hemisphere 125.9
2042 Male, age 76, both hemispheres 110.7
2438 Female, age 94, left hemisphere 105.8
1901 Male, age 80, both hemispheres 101.1
1977 Female, age 85, both hemispheres 100.5
2619 Male, age 74, both hemispheres 96.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 164.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 164.9
Samples: 197

Max nTPM: 2295.5
Min nTPM: 39.5
Std nTPM: 205.1
Median nTPM: 127.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 2295.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 1612.6
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 832.2
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 581.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 578.5
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 444.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 369.5
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 336.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 319.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 312.6
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 284.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 142.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 142.4
FF:10169-103B7 60 years, female 230.1
FF:10153-102I9 76 years, female 54.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 17.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 17.6
Samples: 4

Max nTPM: 27.2
Min nTPM: 11.0
Sample A Female 27.2
Sample B Female 11.0
Sample C Male 16.6
Sample D Male 15.5
Entorhinal cortex
nTPM: 15.9
Samples: 4

Max nTPM: 27.6
Min nTPM: 11.1
Sample A Female 27.6
Sample B Female 11.1
Sample C Male 12.5
Sample D Male 12.5
Subiculum
nTPM: 17.3
Samples: 4

Max nTPM: 32.1
Min nTPM: 7.2
Sample A Female 32.1
Sample B Female 7.2
Sample C Male 9.6
Sample D Male 20.2
Ventral hippocampus
nTPM: 17.7
Samples: 4

Max nTPM: 31.1
Min nTPM: 6.0
Sample A Female 31.1
Sample B Female 6.0
Sample C Male 18.1
Sample D Male 15.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.