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KTN1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:95.3 nTPM
HPA:95.3 nTPM
GTEx:105.9 nTPM
FANTOM5:170.1 Scaled Tags Per Million
Pig:68.5 nTPM
Mouse:38.6 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.9
2019 Male, age 18, unknown 97.0
1870 Female, age 42, unknown 95.3
1830 Male, age 51, unknown 94.4
1833 Male, age 53, unknown 94.0
2666 Male, age 74, left hemisphere 93.2
2411 Female, age 72, unknown 91.3
1827 Male, age 72, unknown 86.5
2828 Female, age 72, unknown 85.3
2219 Male, age 76, both hemispheres 82.6
2586 Male, age 75, left hemisphere 79.2
Dorsal raphe nucleus
nTPM: 87.1
2750 Male, age 76, both hemispheres 93.4
2016 Female, age 72, unknown 92.1
1828 Male, age 53, unknown 86.9
2298 Female, age 72, unknown 82.2
2047 Male, age 72, unknown 81.1
Inferior colliculus
nTPM: 86.0
2097 Female, age 72, unknown 89.2
1890 Male, age 53, unknown 87.6
1848 Female, age 42, unknown 83.7
2849 Male, age 72, unknown 83.3
Median raphe nucleus
nTPM: 92.6
2220 Male, age 76, midline 92.6
Pedunculopontine tegmental nucleus
nTPM: 90.2
2338 Male, age 61, both hemispheres 94.3
2334 Male, age 80, both hemispheres 89.3
1921 Female, age 85, both hemispheres 87.0
Periaquaductal grey, anterior
nTPM: 85.4
2502 Female, age 75, unknown 89.0
1947 Male, age 18, unknown 88.5
1795 Male, age 51, unknown 78.8
Periaquaductal grey, dorsal
nTPM: 88.7
2850 Male, age 76, both hemispheres 91.2
1831 Male, age 72, unknown 90.0
2464 Female, age 72, unknown 89.1
1840 Male, age 53, unknown 84.5
Periaquaductal grey, lateral
nTPM: 85.5
2272 Male, age 74, both hemispheres 87.4
2053 Male, age 18, unknown 85.2
2140 Male, age 76, both hemispheres 83.8
Pretectal area
nTPM: 90.1
1944 Female, age 72, unknown 103.1
1815 Male, age 53, unknown 96.3
1816 Male, age 51, unknown 95.8
1817 Female, age 42, unknown 94.1
2273 Male, age 74, both hemispheres 91.3
2007 Male, age 72, unknown 87.5
2825 Male, age 18, unknown 86.0
2316 Male, age 76, right hemisphere 85.2
2667 Female, age 75, unknown 84.9
2407 Male, age 75, both hemispheres 84.1
2224 Female, age 72, unknown 83.3
Red nucleus
nTPM: 95.3
2503 Female, age 72, unknown 102.4
1865 Male, age 51, unknown 100.5
1904 Male, age 53, unknown 99.7
1821 Female, age 72, unknown 99.5
1954 Female, age 42, unknown 99.0
2823 Male, age 76, right hemisphere 95.3
2725 Female, age 75, unknown 93.5
2227 Male, age 72, unknown 92.6
2785 Male, age 18, unknown 92.0
2769 Male, age 72, unknown 91.6
2588 Male, age 74, left hemisphere 90.5
2584 Male, age 75, left hemisphere 86.6
Substantia nigra
nTPM: 87.5
2241 Male, age 72, unknown 93.7
2409 Female, age 72, unknown 92.6
1889 Female, age 72, unknown 91.2
2665 Male, age 74, both hemispheres 89.6
2699 Male, age 18, unknown 89.1
2590 Female, age 75, unknown 88.8
2583 Male, age 75, right hemisphere 84.0
1941 Male, age 53, unknown 83.8
1851 Male, age 51, unknown 82.8
1916 Female, age 42, unknown 79.7
Superior colliculus
nTPM: 90.8
1995 Male, age 72, unknown 104.9
1913 Female, age 42, unknown 101.8
2087 Female, age 72, unknown 93.4
2587 Male, age 74, left hemisphere 92.4
2668 Female, age 75, unknown 91.5
1895 Male, age 76, right hemisphere 88.6
1839 Male, age 51, unknown 87.3
2261 Male, age 18, unknown 85.5
1796 Male, age 53, unknown 83.6
2664 Male, age 75, both hemispheres 79.3
Ventral tegmental area
nTPM: 84.3
2223 Female, age 72, unknown 90.3
1942 Male, age 51, unknown 84.6
2021 Male, age 53, unknown 83.3
2218 Male, age 76, both hemispheres 83.2
2410 Female, age 72, unknown 82.7
1915 Female, age 42, unknown 82.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 105.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 105.9
Samples: 139

Max nTPM: 223.5
Min nTPM: 49.8
Std nTPM: 31.5
Median nTPM: 99.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 223.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 199.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 183.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 181.9
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 169.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 167.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 165.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 163.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 163.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 162.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 162.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 170.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 170.1
FF:10158-103A5 76 years, female 170.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.5
Pig sample Sample description nTPM
Midbrain
nTPM: 68.5
Samples: 4

Max nTPM: 111.7
Min nTPM: 47.3
Sample A Female 111.7
Sample B Female 63.4
Sample C Male 51.6
Sample D Male 47.3
Periaqueductal gray
nTPM: 48.8
Samples: 3

Max nTPM: 53.6
Min nTPM: 45.8
Sample B Female 45.8
Sample C Male 46.9
Sample D Male 53.6
Substantia nigra
nTPM: 60.8
Samples: 4

Max nTPM: 70.2
Min nTPM: 52.8
Sample A Female 63.2
Sample B Female 52.8
Sample C Male 56.8
Sample D Male 70.2
Superior colliculi
nTPM: 55.5
Samples: 4

Max nTPM: 61.1
Min nTPM: 45.0
Sample A Female 58.1
Sample B Female 45.0
Sample C Male 57.6
Sample D Male 61.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 38.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.6
Samples: 4

Max nTPM: 44.0
Min nTPM: 35.4
Sample A Male 35.4
Sample B Male 37.3
Sample C Female 44.0
Sample D Female 37.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
74635451 Antisense, RP_060215_03_H05, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.