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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.1 nTPM
HPA:24.1 nTPM
GTEx:154.5 nTPM
FANTOM5:463.3 Scaled Tags Per Million
Pig:200.6 nTPM
Mouse:247.8 nTPM
Allen mouse:22.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 24.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.4
2219 Male, age 76, both hemispheres 20.6
1827 Male, age 72, unknown 17.1
2411 Female, age 72, unknown 16.4
2828 Female, age 72, unknown 13.5
1870 Female, age 42, unknown 12.4
2019 Male, age 18, unknown 12.0
1833 Male, age 53, unknown 11.0
1830 Male, age 51, unknown 9.1
2666 Male, age 74, left hemisphere 1.9
2586 Male, age 75, left hemisphere 0.0
Dorsal raphe nucleus
nTPM: 16.4
2298 Female, age 72, unknown 22.1
2750 Male, age 76, both hemispheres 18.8
1828 Male, age 53, unknown 16.2
2047 Male, age 72, unknown 16.0
2016 Female, age 72, unknown 9.0
Inferior colliculus
nTPM: 11.0
2849 Male, age 72, unknown 13.6
1848 Female, age 42, unknown 11.6
1890 Male, age 53, unknown 11.3
2097 Female, age 72, unknown 7.6
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Pedunculopontine tegmental nucleus
nTPM: 18.3
2338 Male, age 61, both hemispheres 24.9
2334 Male, age 80, both hemispheres 16.6
1921 Female, age 85, both hemispheres 13.5
Periaquaductal grey, anterior
nTPM: 9.9
1947 Male, age 18, unknown 13.8
1795 Male, age 51, unknown 11.3
2502 Female, age 75, unknown 4.4
Periaquaductal grey, dorsal
nTPM: 15.7
2850 Male, age 76, both hemispheres 25.5
1831 Male, age 72, unknown 14.3
1840 Male, age 53, unknown 13.5
2464 Female, age 72, unknown 9.4
Periaquaductal grey, lateral
nTPM: 17.7
2272 Male, age 74, both hemispheres 25.3
2140 Male, age 76, both hemispheres 18.9
2053 Male, age 18, unknown 8.9
Pretectal area
nTPM: 13.6
2273 Male, age 74, both hemispheres 24.7
2667 Female, age 75, unknown 18.5
2224 Female, age 72, unknown 16.9
1817 Female, age 42, unknown 14.0
2407 Male, age 75, both hemispheres 12.6
1815 Male, age 53, unknown 11.8
1816 Male, age 51, unknown 11.3
1944 Female, age 72, unknown 11.2
2007 Male, age 72, unknown 9.8
2825 Male, age 18, unknown 9.8
2316 Male, age 76, right hemisphere 9.6
Red nucleus
nTPM: 11.1
2725 Female, age 75, unknown 21.7
1865 Male, age 51, unknown 14.5
2227 Male, age 72, unknown 12.8
2769 Male, age 72, unknown 12.7
2503 Female, age 72, unknown 12.3
2823 Male, age 76, right hemisphere 11.4
1821 Female, age 72, unknown 11.2
1904 Male, age 53, unknown 11.2
2785 Male, age 18, unknown 10.4
1954 Female, age 42, unknown 9.2
2584 Male, age 75, left hemisphere 3.8
2588 Male, age 74, left hemisphere 2.5
Substantia nigra
nTPM: 11.5
1941 Male, age 53, unknown 17.9
1916 Female, age 42, unknown 14.9
2699 Male, age 18, unknown 14.8
2409 Female, age 72, unknown 13.3
2590 Female, age 75, unknown 13.2
1851 Male, age 51, unknown 12.6
1889 Female, age 72, unknown 10.9
2665 Male, age 74, both hemispheres 8.3
2583 Male, age 75, right hemisphere 4.7
2241 Male, age 72, unknown 4.5
Superior colliculus
nTPM: 9.4
2587 Male, age 74, left hemisphere 22.3
1895 Male, age 76, right hemisphere 14.1
1913 Female, age 42, unknown 11.3
1796 Male, age 53, unknown 11.2
2261 Male, age 18, unknown 10.3
1839 Male, age 51, unknown 8.3
1995 Male, age 72, unknown 7.8
2087 Female, age 72, unknown 7.2
2668 Female, age 75, unknown 1.6
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 12.3
2218 Male, age 76, both hemispheres 21.6
1915 Female, age 42, unknown 17.1
2223 Female, age 72, unknown 11.1
2410 Female, age 72, unknown 10.4
1942 Male, age 51, unknown 8.4
2021 Male, age 53, unknown 5.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 154.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 154.5
Samples: 139

Max nTPM: 293.7
Min nTPM: 93.5
Std nTPM: 28.1
Median nTPM: 151.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 293.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 225.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 223.3
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 213.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 211.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 200.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 199.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 199.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 193.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 192.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 192.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 463.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 463.3
FF:10158-103A5 76 years, female 463.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 200.6
Pig sample Sample description nTPM
Midbrain
nTPM: 200.6
Samples: 4

Max nTPM: 245.4
Min nTPM: 171.6
Sample A Female 245.4
Sample B Female 187.5
Sample C Male 197.8
Sample D Male 171.6
Periaqueductal gray
nTPM: 192.0
Samples: 3

Max nTPM: 207.7
Min nTPM: 174.8
Sample B Female 193.4
Sample C Male 207.7
Sample D Male 174.8
Substantia nigra
nTPM: 196.1
Samples: 4

Max nTPM: 229.0
Min nTPM: 169.1
Sample A Female 229.0
Sample B Female 175.3
Sample C Male 210.8
Sample D Male 169.1
Superior colliculi
nTPM: 188.7
Samples: 4

Max nTPM: 199.3
Min nTPM: 172.7
Sample A Female 199.3
Sample B Female 172.7
Sample C Male 192.8
Sample D Male 189.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 247.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 247.8
Samples: 4

Max nTPM: 266.4
Min nTPM: 227.6
Sample A Male 227.6
Sample B Male 246.4
Sample C Female 266.4
Sample D Female 250.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 22.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 22.1
69080016 Antisense, RP_050324_01_D06, Mouse strain C57BL/6J (56 days, male) 22.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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