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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:13.6 nTPM
HPA:13.6 nTPM
GTEx:18.9 nTPM
FANTOM5:44.6 Scaled Tags Per Million
Pig:19.2 nTPM
Mouse:5.0 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA055964
Glial cells Low
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 13.6
Sample id Sample description nTPM
Hippocampus
nTPM: 13.6
1855 Male, age 76, left hemisphere 18.5
2529 Female, age 94, left hemisphere 14.4
1898 Male, age 80, left hemisphere 13.2
1911 Female, age 85, right hemisphere 12.8
2621 Female, age 67, right hemisphere 12.8
2148 Female, age 91, left hemisphere 10.1
Dentate gyrus
nTPM: 13.4
2530 Female, age 94, left hemisphere 18.7
2010 Male, age 76, both hemispheres 18.4
2531 Female, age 67, both hemispheres 16.6
2246 Female, age 85, both hemispheres 9.1
1927 Female, age 91, both hemispheres 9.0
2528 Male, age 74, both hemispheres 8.5
Entorhinal gyrus
nTPM: 12.0
1787 Male, age 76, left hemisphere 23.0
2117 Female, age 91, right hemisphere 12.3
2686 Male, age 75, right hemisphere 11.6
2764 Male, age 80, right hemisphere 9.7
2613 Female, age 94, left hemisphere 8.2
1938 Female, age 85, left hemisphere 7.5
Hippocampus, CA1
nTPM: 10.7
2045 Male, age 76, both hemispheres 14.0
2527 Male, age 74, both hemispheres 12.3
1873 Female, age 85, both hemispheres 12.0
2749 Male, age 80, left hemisphere 9.0
2082 Female, age 91, right hemisphere 6.4
Hippocampus, CA2
nTPM: 11.2
2437 Female, age 94, left hemisphere 16.6
1963 Male, age 80, left hemisphere 13.9
1940 Female, age 85, left hemisphere 10.9
2113 Female, age 91, right hemisphere 9.9
2249 Male, age 74, both hemispheres 8.2
1892 Male, age 76, both hemispheres 8.0
Hippocampus, CA3
nTPM: 13.5
2861 Female, age 67, both hemispheres 31.8
2137 Male, age 80, left hemisphere 12.6
1867 Male, age 76, both hemispheres 11.7
1891 Female, age 85, both hemispheres 10.9
2436 Male, age 74, both hemispheres 7.1
2620 Female, age 94, left hemisphere 6.9
Parahippocampal cortex
nTPM: 10.5
2018 Male, age 76, both hemispheres 17.8
2622 Female, age 67, right hemisphere 14.7
1990 Female, age 91, right hemisphere 12.3
2245 Female, age 91, both hemispheres 12.2
2692 Male, age 74, both hemispheres 10.5
1850 Male, age 80, both hemispheres 10.2
2532 Female, age 72, left hemisphere 8.3
2250 Female, age 67, right hemisphere 6.4
2693 Female, age 94, both hemispheres 6.4
1933 Female, age 85, both hemispheres 5.9
Perirhinal gyrus
nTPM: 8.3
2848 Male, age 76, right hemisphere 9.9
1794 Male, age 80, right hemisphere 9.7
1841 Female, age 85, right hemisphere 9.1
2521 Female, age 94, right hemisphere 7.9
1847 Female, age 91, left hemisphere 4.8
Subiculum
nTPM: 12.8
2042 Male, age 76, both hemispheres 19.8
2619 Male, age 74, both hemispheres 12.5
1901 Male, age 80, both hemispheres 12.4
2438 Female, age 94, left hemisphere 12.2
2729 Female, age 91, right hemisphere 11.7
1977 Female, age 85, both hemispheres 8.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.9
Samples: 197

Max nTPM: 83.9
Min nTPM: 2.2
Std nTPM: 15.8
Median nTPM: 14.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 83.9
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 77.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 75.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 74.0
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 70.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 67.8
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 66.6
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 64.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 55.4
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 53.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 46.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.6
FF:10153-102I9 76 years, female 47.5
FF:10169-103B7 60 years, female 41.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 11.3
Samples: 4

Max nTPM: 16.8
Min nTPM: 8.6
Sample A Female 11.1
Sample B Female 8.6
Sample C Male 16.8
Sample D Male 8.7
Entorhinal cortex
nTPM: 19.2
Samples: 4

Max nTPM: 24.8
Min nTPM: 10.9
Sample A Female 23.5
Sample B Female 17.7
Sample C Male 24.8
Sample D Male 10.9
Subiculum
nTPM: 14.7
Samples: 4

Max nTPM: 17.7
Min nTPM: 7.1
Sample A Female 16.3
Sample B Female 7.1
Sample C Male 17.7
Sample D Male 17.7
Ventral hippocampus
nTPM: 14.7
Samples: 4

Max nTPM: 26.7
Min nTPM: 9.8
Sample A Female 11.2
Sample B Female 11.2
Sample C Male 26.7
Sample D Male 9.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 5.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 5.0
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.0
Sample A Male 4.0
Sample B Male 6.1
Sample C Female 4.8
Sample D Female 5.0
Hippocampal formation
nTPM: 3.8
Samples: 4

Max nTPM: 4.8
Min nTPM: 2.4
Sample A Male 2.4
Sample B Male 3.8
Sample C Female 4.0
Sample D Female 4.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
74635803 Antisense, RP_060215_04_D10, Mouse strain C57BL/6J (56 days, male) 1.1

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