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MACF1
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:159.7 nTPM
HPA:159.7 nTPM
GTEx:123.4 nTPM
FANTOM5:135.2 Scaled Tags Per Million
Pig:49.1 nTPM
Mouse:57.0 nTPM
Allen mouse:10.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA013713Antibody HPA068064
Glial cells LowNot detected
Neuronal cells LowNot detected




HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 159.7
Sample id Sample description nTPM
Hippocampus
nTPM: 153.3
2529 Female, age 94, left hemisphere 188.0
2148 Female, age 91, left hemisphere 152.9
1911 Female, age 85, right hemisphere 152.8
2621 Female, age 67, right hemisphere 146.3
1898 Male, age 80, left hemisphere 140.4
1855 Male, age 76, left hemisphere 139.1
Dentate gyrus
nTPM: 143.1
2246 Female, age 85, both hemispheres 151.6
2530 Female, age 94, left hemisphere 151.4
2528 Male, age 74, both hemispheres 150.1
2531 Female, age 67, both hemispheres 139.2
2010 Male, age 76, both hemispheres 133.9
1927 Female, age 91, both hemispheres 132.6
Entorhinal gyrus
nTPM: 159.7
2686 Male, age 75, right hemisphere 188.2
2613 Female, age 94, left hemisphere 156.2
2764 Male, age 80, right hemisphere 156.1
2117 Female, age 91, right hemisphere 153.9
1787 Male, age 76, left hemisphere 153.4
1938 Female, age 85, left hemisphere 150.6
Hippocampus, CA1
nTPM: 147.2
2527 Male, age 74, both hemispheres 158.9
2749 Male, age 80, left hemisphere 156.8
2082 Female, age 91, right hemisphere 148.8
1873 Female, age 85, both hemispheres 146.6
2045 Male, age 76, both hemispheres 124.7
Hippocampus, CA2
nTPM: 147.6
1963 Male, age 80, left hemisphere 155.9
2113 Female, age 91, right hemisphere 154.0
1940 Female, age 85, left hemisphere 153.3
2437 Female, age 94, left hemisphere 149.8
2249 Male, age 74, both hemispheres 143.9
1892 Male, age 76, both hemispheres 128.6
Hippocampus, CA3
nTPM: 144.7
2137 Male, age 80, left hemisphere 157.7
2861 Female, age 67, both hemispheres 153.8
1891 Female, age 85, both hemispheres 151.2
2620 Female, age 94, left hemisphere 141.0
1867 Male, age 76, both hemispheres 133.1
2436 Male, age 74, both hemispheres 131.2
Parahippocampal cortex
nTPM: 154.6
2692 Male, age 74, both hemispheres 183.0
2622 Female, age 67, right hemisphere 177.6
1850 Male, age 80, both hemispheres 154.4
1933 Female, age 85, both hemispheres 150.9
2250 Female, age 67, right hemisphere 148.4
2693 Female, age 94, both hemispheres 147.4
2018 Male, age 76, both hemispheres 147.3
2245 Female, age 91, both hemispheres 145.7
2532 Female, age 72, left hemisphere 145.7
1990 Female, age 91, right hemisphere 145.6
Perirhinal gyrus
nTPM: 140.3
2521 Female, age 94, right hemisphere 142.5
1794 Male, age 80, right hemisphere 141.5
2848 Male, age 76, right hemisphere 141.3
1847 Female, age 91, left hemisphere 138.7
1841 Female, age 85, right hemisphere 137.3
Subiculum
nTPM: 156.5
2438 Female, age 94, left hemisphere 167.5
2619 Male, age 74, both hemispheres 164.7
1901 Male, age 80, both hemispheres 156.7
2729 Female, age 91, right hemisphere 154.1
1977 Female, age 85, both hemispheres 148.7
2042 Male, age 76, both hemispheres 147.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 123.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 123.4
Samples: 197

Max nTPM: 218.5
Min nTPM: 64.5
Std nTPM: 27.5
Median nTPM: 120.8
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 218.5
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 204.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 188.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 184.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 179.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 179.0
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 176.8
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 176.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 175.7
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 175.6
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 175.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 135.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 135.2
FF:10153-102I9 76 years, female 147.0
FF:10169-103B7 60 years, female 123.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 49.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 48.0
Samples: 4

Max nTPM: 52.1
Min nTPM: 44.4
Sample A Female 44.4
Sample B Female 47.3
Sample C Male 52.1
Sample D Male 48.0
Entorhinal cortex
nTPM: 47.8
Samples: 4

Max nTPM: 49.1
Min nTPM: 46.5
Sample A Female 46.7
Sample B Female 48.9
Sample C Male 46.5
Sample D Male 49.1
Subiculum
nTPM: 49.1
Samples: 4

Max nTPM: 50.6
Min nTPM: 47.2
Sample A Female 47.2
Sample B Female 48.3
Sample C Male 50.4
Sample D Male 50.6
Ventral hippocampus
nTPM: 48.8
Samples: 4

Max nTPM: 53.4
Min nTPM: 44.4
Sample A Female 44.4
Sample B Female 46.4
Sample C Male 50.9
Sample D Male 53.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 57.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 56.7
Samples: 4

Max nTPM: 60.8
Min nTPM: 53.8
Sample A Male 60.8
Sample B Male 53.8
Sample C Female 54.1
Sample D Female 58.2
Hippocampal formation
nTPM: 57.0
Samples: 4

Max nTPM: 70.6
Min nTPM: 42.0
Sample A Male 42.0
Sample B Male 70.6
Sample C Female 66.6
Sample D Female 48.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 10.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 10.1
69736400 Antisense, RP_050503_04_G01, Mouse strain C57BL/6J (56 days, male) 10.1

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