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SMARCA4
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:15.4 nTPM
HPA:15.4 nTPM
GTEx:12.5 nTPM
FANTOM5:44.1 Scaled Tags Per Million
Pig:38.4 nTPM
Mouse:41.9 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB004208
Glial cells High
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 15.4
Sample id Sample description nTPM
Hippocampus
nTPM: 12.2
2621 Female, age 67, right hemisphere 17.2
2529 Female, age 94, left hemisphere 15.4
2148 Female, age 91, left hemisphere 12.7
1855 Male, age 76, left hemisphere 10.4
1911 Female, age 85, right hemisphere 10.2
1898 Male, age 80, left hemisphere 7.6
Dentate gyrus
nTPM: 11.8
2531 Female, age 67, both hemispheres 21.7
2530 Female, age 94, left hemisphere 16.8
1927 Female, age 91, both hemispheres 12.5
2246 Female, age 85, both hemispheres 9.8
2010 Male, age 76, both hemispheres 6.8
2528 Male, age 74, both hemispheres 3.3
Entorhinal gyrus
nTPM: 14.1
2613 Female, age 94, left hemisphere 20.8
2686 Male, age 75, right hemisphere 16.9
2764 Male, age 80, right hemisphere 16.7
1787 Male, age 76, left hemisphere 13.4
1938 Female, age 85, left hemisphere 10.7
2117 Female, age 91, right hemisphere 6.2
Hippocampus, CA1
nTPM: 11.1
2749 Male, age 80, left hemisphere 18.1
2045 Male, age 76, both hemispheres 12.3
2527 Male, age 74, both hemispheres 9.0
1873 Female, age 85, both hemispheres 8.5
2082 Female, age 91, right hemisphere 7.6
Hippocampus, CA2
nTPM: 10.0
2437 Female, age 94, left hemisphere 15.6
1892 Male, age 76, both hemispheres 13.3
1940 Female, age 85, left hemisphere 10.5
2113 Female, age 91, right hemisphere 8.7
1963 Male, age 80, left hemisphere 8.1
2249 Male, age 74, both hemispheres 4.1
Hippocampus, CA3
nTPM: 15.4
2861 Female, age 67, both hemispheres 24.8
2620 Female, age 94, left hemisphere 24.4
2137 Male, age 80, left hemisphere 19.8
2436 Male, age 74, both hemispheres 9.5
1867 Male, age 76, both hemispheres 9.0
1891 Female, age 85, both hemispheres 5.2
Parahippocampal cortex
nTPM: 12.5
2622 Female, age 67, right hemisphere 21.8
2245 Female, age 91, both hemispheres 18.3
2693 Female, age 94, both hemispheres 12.3
2532 Female, age 72, left hemisphere 12.0
2692 Male, age 74, both hemispheres 12.0
1850 Male, age 80, both hemispheres 10.6
2250 Female, age 67, right hemisphere 10.2
1933 Female, age 85, both hemispheres 9.6
1990 Female, age 91, right hemisphere 9.0
2018 Male, age 76, both hemispheres 8.9
Perirhinal gyrus
nTPM: 13.2
1794 Male, age 80, right hemisphere 14.4
2521 Female, age 94, right hemisphere 13.6
1847 Female, age 91, left hemisphere 13.3
2848 Male, age 76, right hemisphere 12.5
1841 Female, age 85, right hemisphere 11.9
Subiculum
nTPM: 10.3
2438 Female, age 94, left hemisphere 17.2
2619 Male, age 74, both hemispheres 11.7
1901 Male, age 80, both hemispheres 11.3
1977 Female, age 85, both hemispheres 7.7
2042 Male, age 76, both hemispheres 7.4
2729 Female, age 91, right hemisphere 6.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 12.5
Samples: 197

Max nTPM: 27.7
Min nTPM: 4.5
Std nTPM: 3.7
Median nTPM: 11.8
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 27.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 24.6
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 23.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 23.6
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 22.9
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 22.2
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 20.6
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 20.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 20.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 20.0
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 19.8
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 44.1
FF:10153-102I9 76 years, female 47.5
FF:10169-103B7 60 years, female 40.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 38.5
Samples: 4

Max nTPM: 46.4
Min nTPM: 32.1
Sample A Female 46.4
Sample B Female 42.8
Sample C Male 32.1
Sample D Male 32.5
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 32.9
Min nTPM: 27.7
Sample A Female 32.9
Sample B Female 28.9
Sample C Male 30.1
Sample D Male 27.7
Subiculum
nTPM: 28.7
Samples: 4

Max nTPM: 34.0
Min nTPM: 24.9
Sample A Female 34.0
Sample B Female 24.9
Sample C Male 29.0
Sample D Male 26.8
Ventral hippocampus
nTPM: 34.8
Samples: 4

Max nTPM: 41.1
Min nTPM: 24.1
Sample A Female 33.2
Sample B Female 24.1
Sample C Male 40.8
Sample D Male 41.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 41.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.7
Samples: 4

Max nTPM: 46.4
Min nTPM: 38.1
Sample A Male 39.5
Sample B Male 38.1
Sample C Female 38.7
Sample D Female 46.4
Hippocampal formation
nTPM: 41.9
Samples: 4

Max nTPM: 47.9
Min nTPM: 33.0
Sample A Male 33.0
Sample B Male 44.4
Sample C Female 47.9
Sample D Female 42.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
71488774 Antisense, RP_050825_03_A01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

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