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EMC6
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:36.0 nTPM
HPA:36.0 nTPM
GTEx:47.9 nTPM
FANTOM5:53.8 Scaled Tags Per Million
Mouse:45.1 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA062681
Glial cells Not detected
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 36.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 35.3
2481 Female, age 94, left hemisphere 38.2
2846 Female, age 79, unknown 35.7
1857 Female, age 85, left hemisphere 34.9
2288 Male, age 75, left hemisphere 34.9
1781 Male, age 74, unknown 34.7
2289 Male, age 61, right hemisphere 34.7
1854 Male, age 80, left hemisphere 34.6
2290 Female, age 72, unknown 34.5
Claustrum
nTPM: 32.9
2198 Male, age 80, both hemispheres 35.6
1956 Male, age 74, unknown 34.7
2196 Female, age 79, unknown 33.5
2491 Male, age 75, both hemispheres 32.8
2392 Female, age 94, both hemispheres 32.7
2292 Female, age 85, both hemispheres 32.4
2568 Male, age 61, both hemispheres 31.8
2284 Female, age 91, both hemispheres 31.7
2645 Female, age 72, unknown 31.1
Globus pallidus, externus
nTPM: 35.8
2772 Female, age 79, unknown 40.1
1996 Male, age 80, right hemisphere 39.2
2395 Male, age 75, both hemispheres 35.1
2646 Male, age 61, right hemisphere 34.4
2567 Female, age 72, unknown 30.5
Globus pallidus, internus
nTPM: 36.0
2287 Male, age 75, right hemisphere 40.1
1818 Male, age 74, unknown 37.6
2483 Female, age 94, right hemisphere 37.5
2778 Female, age 91, both hemispheres 37.4
2037 Male, age 80, right hemisphere 34.6
2111 Female, age 85, right hemisphere 33.9
2566 Female, age 72, unknown 31.1
Nucleus accumbens
nTPM: 34.4
2286 Male, age 75, left hemisphere 37.8
1783 Male, age 74, unknown 35.6
2698 Female, age 72, unknown 35.3
1806 Female, age 85, left hemisphere 34.8
2391 Female, age 94, left hemisphere 33.9
1856 Female, age 91, right hemisphere 33.5
2732 Male, age 80, right hemisphere 32.4
2824 Male, age 61, right hemisphere 32.2
Nucleus basalis of Meynert
nTPM: 34.1
2484 Female, age 94, left hemisphere 35.1
2393 Male, age 80, right hemisphere 34.1
2821 Male, age 75, both hemispheres 33.7
2569 Male, age 61, both hemispheres 33.5
Nucleus of the diagonal band
nTPM: 34.3
1812 Female, age 91, both hemispheres 35.6
2775 Male, age 80, right hemisphere 34.5
2029 Male, age 61, right hemisphere 34.1
1979 Male, age 74, unknown 33.7
2195 Female, age 85, both hemispheres 33.6
Olfactory tubercle
nTPM: 33.5
1846 Male, age 80, right hemisphere 35.0
1998 Female, age 91, both hemispheres 33.7
2856 Male, age 75, right hemisphere 33.4
2487 Female, age 94, left hemisphere 31.9
Putamen
nTPM: 34.2
2482 Female, age 94, left hemisphere 37.0
2466 Female, age 79, unknown 35.6
1838 Male, age 80, right hemisphere 34.2
1937 Female, age 91, right hemisphere 34.2
1829 Male, age 74, unknown 33.7
2647 Male, age 75, left hemisphere 33.6
2489 Female, age 72, unknown 31.4
Septal nuclei
nTPM: 34.6
1960 Male, age 74, unknown 36.8
2031 Female, age 72, unknown 36.5
2629 Female, age 94, right hemisphere 34.7
2009 Female, age 91, both hemispheres 34.6
2199 Male, age 80, right hemisphere 33.8
2059 Female, age 85, both hemispheres 33.1
2394 Male, age 61, left hemisphere 32.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.1
Samples: 246

Max nTPM: 87.0
Min nTPM: 20.4
Std nTPM: 10.5
Median nTPM: 40.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 87.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 86.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 79.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 76.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 76.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 68.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 66.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 63.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 63.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 61.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 40.5
Samples: 246

Max nTPM: 98.3
Min nTPM: 18.6
Std nTPM: 12.2
Median nTPM: 38.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 98.3
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 95.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 90.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 86.3
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 84.7
GTEX-X261-0011-R6B-SM-4E3J8 50-59 years, male 79.7
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 71.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 68.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 66.1
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 63.8
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 61.9
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Brain - Putamen (basal ganglia)
Average nTPM: 47.9
Samples: 205

Max nTPM: 113.7
Min nTPM: 19.7
Std nTPM: 11.2
Median nTPM: 47.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 113.7
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 87.8
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 85.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 80.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 75.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 72.5
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 71.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 70.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 69.2
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 68.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 66.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.1
FF:10164-103B2 76 years, female 45.1
Globus pallidus
Scaled Tags Per Million: 53.8
FF:10175-103C4 60 years, female 63.1
FF:10161-103A8 76 years, female 44.6
Nucleus accumbens
Scaled Tags Per Million: 51.0
FF:10037-101F1 23-56 years, mixed 51.0
Putamen
Scaled Tags Per Million: 43.4
FF:10176-103C5 60 years, female 43.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 45.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 37.3
Samples: 4

Max nTPM: 38.3
Min nTPM: 35.4
Sample A Male 35.4
Sample B Male 38.3
Sample C Female 37.5
Sample D Female 38.0
Septum
nTPM: 45.1
Samples: 4

Max nTPM: 50.7
Min nTPM: 39.4
Sample A Male 39.4
Sample B Male 50.7
Sample C Female 46.1
Sample D Female 44.2
Ventral forebrain
nTPM: 39.9
Samples: 4

Max nTPM: 47.3
Min nTPM: 35.7
Sample A Male 35.7
Sample B Male 39.4
Sample C Female 47.3
Sample D Female 37.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
68410518 Antisense, RP_041214_02_A10, Mouse strain C57BL/6J (56 days, male) 0.3
Pallidum
Expression energy: 0.6
68410518 Antisense, RP_041214_02_A10, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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