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TUBA4A
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:27.3 nTPM
HPA:27.3 nTPM
GTEx:62.3 nTPM
FANTOM5:37.1 Scaled Tags Per Million
Pig:145.0 nTPM
Mouse:334.9 nTPM
Allen mouse:9.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 27.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 5.3
2219 Male, age 76, both hemispheres 18.9
2666 Male, age 74, left hemisphere 12.5
1827 Male, age 72, unknown 6.9
1833 Male, age 53, unknown 5.6
2019 Male, age 18, unknown 4.4
1830 Male, age 51, unknown 2.9
2411 Female, age 72, unknown 2.4
1870 Female, age 42, unknown 0.0
2586 Male, age 75, left hemisphere 0.0
2828 Female, age 72, unknown 0.0
Dorsal raphe nucleus
nTPM: 3.3
2298 Female, age 72, unknown 7.0
2047 Male, age 72, unknown 6.2
1828 Male, age 53, unknown 3.1
2750 Male, age 76, both hemispheres 0.3
2016 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 3.3
2849 Male, age 72, unknown 13.3
1848 Female, age 42, unknown 0.0
1890 Male, age 53, unknown 0.0
2097 Female, age 72, unknown 0.0
Median raphe nucleus
nTPM: 27.3
2220 Male, age 76, midline 27.3
Pedunculopontine tegmental nucleus
nTPM: 10.8
2334 Male, age 80, both hemispheres 14.4
1921 Female, age 85, both hemispheres 9.3
2338 Male, age 61, both hemispheres 8.7
Periaquaductal grey, anterior
nTPM: 3.7
1947 Male, age 18, unknown 7.4
1795 Male, age 51, unknown 3.7
2502 Female, age 75, unknown 0.1
Periaquaductal grey, dorsal
nTPM: 3.3
2850 Male, age 76, both hemispheres 11.7
1840 Male, age 53, unknown 1.5
1831 Male, age 72, unknown 0.0
2464 Female, age 72, unknown 0.0
Periaquaductal grey, lateral
nTPM: 2.3
2272 Male, age 74, both hemispheres 6.9
2053 Male, age 18, unknown 0.0
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 8.1
1817 Female, age 42, unknown 17.8
1944 Female, age 72, unknown 17.3
1816 Male, age 51, unknown 14.7
2007 Male, age 72, unknown 13.5
2667 Female, age 75, unknown 13.2
1815 Male, age 53, unknown 6.6
2224 Female, age 72, unknown 5.1
2273 Male, age 74, both hemispheres 0.4
2825 Male, age 18, unknown 0.3
2316 Male, age 76, right hemisphere 0.0
2407 Male, age 75, both hemispheres 0.0
Red nucleus
nTPM: 2.7
1821 Female, age 72, unknown 12.5
1954 Female, age 42, unknown 9.3
2588 Male, age 74, left hemisphere 5.4
2785 Male, age 18, unknown 2.3
2725 Female, age 75, unknown 2.1
2584 Male, age 75, left hemisphere 0.8
1865 Male, age 51, unknown 0.0
1904 Male, age 53, unknown 0.0
2227 Male, age 72, unknown 0.0
2503 Female, age 72, unknown 0.0
2769 Male, age 72, unknown 0.0
2823 Male, age 76, right hemisphere 0.0
Substantia nigra
nTPM: 9.2
1916 Female, age 42, unknown 26.2
1941 Male, age 53, unknown 19.2
1889 Female, age 72, unknown 16.3
1851 Male, age 51, unknown 10.1
2241 Male, age 72, unknown 9.4
2699 Male, age 18, unknown 9.4
2665 Male, age 74, both hemispheres 1.6
2409 Female, age 72, unknown 0.0
2583 Male, age 75, right hemisphere 0.0
2590 Female, age 75, unknown 0.0
Superior colliculus
nTPM: 1.8
1796 Male, age 53, unknown 6.9
2087 Female, age 72, unknown 4.5
2261 Male, age 18, unknown 2.4
2668 Female, age 75, unknown 2.1
1895 Male, age 76, right hemisphere 1.2
1839 Male, age 51, unknown 0.7
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
2587 Male, age 74, left hemisphere 0.0
2664 Male, age 75, both hemispheres 0.0
Ventral tegmental area
nTPM: 9.1
2410 Female, age 72, unknown 18.8
2218 Male, age 76, both hemispheres 16.3
1915 Female, age 42, unknown 14.4
2223 Female, age 72, unknown 5.3
1942 Male, age 51, unknown 0.0
2021 Male, age 53, unknown 0.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.3
Samples: 139

Max nTPM: 261.0
Min nTPM: 9.5
Std nTPM: 43.7
Median nTPM: 48.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 261.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 213.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 166.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 162.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 149.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 148.5
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 139.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 139.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 137.4
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 136.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 132.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.1
FF:10158-103A5 76 years, female 37.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 145.0
Pig sample Sample description nTPM
Midbrain
nTPM: 121.5
Samples: 4

Max nTPM: 191.9
Min nTPM: 68.4
Sample A Female 68.4
Sample B Female 88.4
Sample C Male 191.9
Sample D Male 137.3
Periaqueductal gray
nTPM: 99.0
Samples: 3

Max nTPM: 115.2
Min nTPM: 90.2
Sample B Female 90.2
Sample C Male 115.2
Sample D Male 91.7
Substantia nigra
nTPM: 93.9
Samples: 4

Max nTPM: 149.1
Min nTPM: 44.4
Sample A Female 149.1
Sample B Female 63.1
Sample C Male 119.1
Sample D Male 44.4
Superior colliculi
nTPM: 145.0
Samples: 4

Max nTPM: 199.3
Min nTPM: 72.5
Sample A Female 182.2
Sample B Female 72.5
Sample C Male 199.3
Sample D Male 125.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 334.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 334.9
Samples: 4

Max nTPM: 343.1
Min nTPM: 330.1
Sample A Male 330.1
Sample B Male 334.1
Sample C Female 332.4
Sample D Female 343.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.0
70616005 Antisense, RP_050725_01_D08, Mouse strain C57BL/6J (56 days, male) 10.7
564648 Antisense, RP_040826_01_B04, Mouse strain C57BL/6J (56 days, male) 7.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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