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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.6 nTPM
HPA:21.6 nTPM
GTEx:37.2 nTPM
FANTOM5:34.8 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:40.4 nTPM
Allen mouse:0.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 21.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 21.1
2288 Male, age 75, left hemisphere 22.8
1857 Female, age 85, left hemisphere 22.1
2481 Female, age 94, left hemisphere 21.6
1854 Male, age 80, left hemisphere 21.4
2290 Female, age 72, unknown 20.8
2846 Female, age 79, unknown 20.7
1781 Male, age 74, unknown 20.1
2289 Male, age 61, right hemisphere 19.5
Claustrum
nTPM: 19.1
2491 Male, age 75, both hemispheres 20.4
2392 Female, age 94, both hemispheres 20.2
1956 Male, age 74, unknown 20.1
2292 Female, age 85, both hemispheres 19.9
2196 Female, age 79, unknown 19.5
2645 Female, age 72, unknown 18.5
2198 Male, age 80, both hemispheres 18.4
2568 Male, age 61, both hemispheres 18.1
2284 Female, age 91, both hemispheres 17.2
Globus pallidus, externus
nTPM: 19.9
2772 Female, age 79, unknown 21.4
1996 Male, age 80, right hemisphere 21.2
2395 Male, age 75, both hemispheres 20.2
2646 Male, age 61, right hemisphere 19.0
2567 Female, age 72, unknown 17.8
Globus pallidus, internus
nTPM: 21.5
2778 Female, age 91, both hemispheres 23.1
2287 Male, age 75, right hemisphere 22.3
1818 Male, age 74, unknown 22.1
2111 Female, age 85, right hemisphere 22.1
2037 Male, age 80, right hemisphere 20.7
2483 Female, age 94, right hemisphere 20.7
2566 Female, age 72, unknown 19.3
Nucleus accumbens
nTPM: 21.6
2286 Male, age 75, left hemisphere 22.9
2698 Female, age 72, unknown 22.6
1856 Female, age 91, right hemisphere 22.0
2824 Male, age 61, right hemisphere 21.8
2391 Female, age 94, left hemisphere 21.5
1783 Male, age 74, unknown 21.4
1806 Female, age 85, left hemisphere 20.8
2732 Male, age 80, right hemisphere 20.0
Nucleus basalis of Meynert
nTPM: 20.1
2393 Male, age 80, right hemisphere 20.5
2484 Female, age 94, left hemisphere 20.5
2821 Male, age 75, both hemispheres 20.2
2569 Male, age 61, both hemispheres 19.4
Nucleus of the diagonal band
nTPM: 20.9
1979 Male, age 74, unknown 22.0
2195 Female, age 85, both hemispheres 21.4
1812 Female, age 91, both hemispheres 20.5
2775 Male, age 80, right hemisphere 20.4
2029 Male, age 61, right hemisphere 20.3
Olfactory tubercle
nTPM: 19.6
2487 Female, age 94, left hemisphere 20.1
1998 Female, age 91, both hemispheres 19.5
1846 Male, age 80, right hemisphere 19.4
2856 Male, age 75, right hemisphere 19.4
Putamen
nTPM: 20.7
1838 Male, age 80, right hemisphere 22.0
2466 Female, age 79, unknown 21.2
2482 Female, age 94, left hemisphere 21.1
1829 Male, age 74, unknown 21.0
1937 Female, age 91, right hemisphere 20.5
2489 Female, age 72, unknown 20.1
2647 Male, age 75, left hemisphere 19.0
Septal nuclei
nTPM: 20.3
2629 Female, age 94, right hemisphere 20.7
2199 Male, age 80, right hemisphere 20.6
2059 Female, age 85, both hemispheres 20.4
2394 Male, age 61, left hemisphere 20.3
1960 Male, age 74, unknown 20.2
2031 Female, age 72, unknown 20.2
2009 Female, age 91, both hemispheres 19.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.5
Samples: 246

Max nTPM: 65.2
Min nTPM: 22.5
Std nTPM: 5.4
Median nTPM: 35.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 65.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 61.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 58.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 55.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 55.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 53.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 50.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 49.0
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 47.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 46.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 46.4
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 36.7
Samples: 246

Max nTPM: 90.5
Min nTPM: 20.0
Std nTPM: 6.8
Median nTPM: 36.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 90.5
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 69.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 60.7
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 55.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 55.1
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 50.0
GTEX-1C6VR-0011-R6a-SM-7MXU8 60-69 years, male 49.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 49.2
GTEX-14E7W-0011-R6b-SM-5ZZV3 70-79 years, male 47.8
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 47.0
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 47.0
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Brain - Putamen (basal ganglia)
Average nTPM: 37.2
Samples: 205

Max nTPM: 62.4
Min nTPM: 24.0
Std nTPM: 5.9
Median nTPM: 36.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 62.4
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 57.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 56.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 53.9
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 53.5
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 53.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 51.4
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 50.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 48.6
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 48.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 47.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 34.8
FF:10164-103B2 76 years, female 34.8
Globus pallidus
Scaled Tags Per Million: 26.4
FF:10161-103A8 76 years, female 28.3
FF:10175-103C4 60 years, female 24.4
Nucleus accumbens
Scaled Tags Per Million: 28.6
FF:10037-101F1 23-56 years, mixed 28.6
Putamen
Scaled Tags Per Million: 28.4
FF:10176-103C5 60 years, female 28.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Caudate
nTPM: 21.4
Samples: 4

Max nTPM: 23.9
Min nTPM: 19.9
Sample A Female 23.9
Sample B Female 20.8
Sample C Male 21.0
Sample D Male 19.9
Putamen
nTPM: 27.0
Samples: 4

Max nTPM: 31.1
Min nTPM: 21.0
Sample A Female 31.1
Sample B Female 21.0
Sample C Male 29.9
Sample D Male 25.9
Septum
nTPM: 26.7
Samples: 4

Max nTPM: 31.1
Min nTPM: 23.9
Sample A Female 31.1
Sample B Female 24.4
Sample C Male 23.9
Sample D Male 27.4
Ventral pallidum
nTPM: 25.0
Samples: 4

Max nTPM: 29.4
Min nTPM: 21.2
Sample A Female 24.5
Sample B Female 24.9
Sample C Male 21.2
Sample D Male 29.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 38.7
Samples: 4

Max nTPM: 41.6
Min nTPM: 36.2
Sample A Male 41.6
Sample B Male 37.0
Sample C Female 36.2
Sample D Female 40.0
Septum
nTPM: 40.4
Samples: 4

Max nTPM: 44.5
Min nTPM: 37.0
Sample A Male 37.0
Sample B Male 41.1
Sample C Female 38.9
Sample D Female 44.5
Ventral forebrain
nTPM: 34.8
Samples: 4

Max nTPM: 38.7
Min nTPM: 32.6
Sample A Male 33.1
Sample B Male 32.6
Sample C Female 38.7
Sample D Female 34.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
68301168 Antisense, RP_041129_02_G02, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.6
68301168 Antisense, RP_041129_02_G02, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.