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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.1 nTPM
HPA:30.1 nTPM
GTEx:38.2 nTPM
FANTOM5:51.7 Scaled Tags Per Million
Pig:14.7 nTPM
Mouse:131.4 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.0
1870 Female, age 42, unknown 27.4
2411 Female, age 72, unknown 25.7
1833 Male, age 53, unknown 25.5
1827 Male, age 72, unknown 25.3
2828 Female, age 72, unknown 25.2
2019 Male, age 18, unknown 24.6
1830 Male, age 51, unknown 23.6
2219 Male, age 76, both hemispheres 21.3
2586 Male, age 75, left hemisphere 21.3
2666 Male, age 74, left hemisphere 20.2
Dorsal raphe nucleus
nTPM: 26.1
2016 Female, age 72, unknown 28.4
1828 Male, age 53, unknown 27.5
2298 Female, age 72, unknown 25.9
2047 Male, age 72, unknown 24.9
2750 Male, age 76, both hemispheres 23.9
Inferior colliculus
nTPM: 30.1
1848 Female, age 42, unknown 33.9
2097 Female, age 72, unknown 30.1
2849 Male, age 72, unknown 29.6
1890 Male, age 53, unknown 26.6
Median raphe nucleus
nTPM: 24.5
2220 Male, age 76, midline 24.5
Pedunculopontine tegmental nucleus
nTPM: 24.8
1921 Female, age 85, both hemispheres 26.1
2334 Male, age 80, both hemispheres 25.6
2338 Male, age 61, both hemispheres 22.6
Periaquaductal grey, anterior
nTPM: 22.5
2502 Female, age 75, unknown 24.4
1947 Male, age 18, unknown 22.7
1795 Male, age 51, unknown 20.4
Periaquaductal grey, dorsal
nTPM: 27.1
1840 Male, age 53, unknown 31.3
2850 Male, age 76, both hemispheres 26.5
2464 Female, age 72, unknown 26.1
1831 Male, age 72, unknown 24.7
Periaquaductal grey, lateral
nTPM: 25.9
2053 Male, age 18, unknown 26.3
2140 Male, age 76, both hemispheres 25.8
2272 Male, age 74, both hemispheres 25.7
Pretectal area
nTPM: 25.6
2273 Male, age 74, both hemispheres 30.2
2316 Male, age 76, right hemisphere 27.9
2667 Female, age 75, unknown 27.8
2224 Female, age 72, unknown 25.9
1944 Female, age 72, unknown 25.5
1817 Female, age 42, unknown 25.1
2825 Male, age 18, unknown 24.7
1816 Male, age 51, unknown 24.5
1815 Male, age 53, unknown 24.2
2007 Male, age 72, unknown 23.6
2407 Male, age 75, both hemispheres 22.1
Red nucleus
nTPM: 24.9
1821 Female, age 72, unknown 28.9
1954 Female, age 42, unknown 28.0
2503 Female, age 72, unknown 26.5
2227 Male, age 72, unknown 26.3
2823 Male, age 76, right hemisphere 26.1
1865 Male, age 51, unknown 25.3
2769 Male, age 72, unknown 25.0
1904 Male, age 53, unknown 24.5
2725 Female, age 75, unknown 24.5
2785 Male, age 18, unknown 23.1
2588 Male, age 74, left hemisphere 22.8
2584 Male, age 75, left hemisphere 17.9
Substantia nigra
nTPM: 25.6
2241 Male, age 72, unknown 29.8
2699 Male, age 18, unknown 27.6
1916 Female, age 42, unknown 27.4
2409 Female, age 72, unknown 26.4
1851 Male, age 51, unknown 26.2
1889 Female, age 72, unknown 26.1
1941 Male, age 53, unknown 25.6
2590 Female, age 75, unknown 24.5
2665 Male, age 74, both hemispheres 21.3
2583 Male, age 75, right hemisphere 21.1
Superior colliculus
nTPM: 24.4
1895 Male, age 76, right hemisphere 28.1
1839 Male, age 51, unknown 27.7
2587 Male, age 74, left hemisphere 25.4
2087 Female, age 72, unknown 24.9
2664 Male, age 75, both hemispheres 24.0
1796 Male, age 53, unknown 23.3
2261 Male, age 18, unknown 23.2
1913 Female, age 42, unknown 22.8
1995 Male, age 72, unknown 22.6
2668 Female, age 75, unknown 21.4
Ventral tegmental area
nTPM: 25.2
1915 Female, age 42, unknown 27.0
2410 Female, age 72, unknown 26.5
2218 Male, age 76, both hemispheres 25.2
1942 Male, age 51, unknown 24.3
2223 Female, age 72, unknown 24.3
2021 Male, age 53, unknown 23.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.2
Samples: 139

Max nTPM: 85.0
Min nTPM: 19.9
Std nTPM: 11.7
Median nTPM: 35.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 85.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 82.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 78.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 75.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 72.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 64.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 61.3
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 57.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 55.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 55.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 55.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.7
FF:10158-103A5 76 years, female 51.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.7
Pig sample Sample description nTPM
Midbrain
nTPM: 14.7
Samples: 4

Max nTPM: 22.5
Min nTPM: 10.6
Sample A Female 22.5
Sample B Female 13.8
Sample C Male 10.6
Sample D Male 11.7
Periaqueductal gray
nTPM: 13.2
Samples: 3

Max nTPM: 14.3
Min nTPM: 11.9
Sample B Female 14.3
Sample C Male 11.9
Sample D Male 13.3
Substantia nigra
nTPM: 14.7
Samples: 4

Max nTPM: 16.3
Min nTPM: 13.1
Sample A Female 13.9
Sample B Female 16.3
Sample C Male 13.1
Sample D Male 15.4
Superior colliculi
nTPM: 13.2
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.9
Sample A Female 14.2
Sample B Female 14.9
Sample C Male 10.9
Sample D Male 12.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 131.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 131.4
Samples: 4

Max nTPM: 135.3
Min nTPM: 127.2
Sample A Male 131.5
Sample B Male 135.3
Sample C Female 131.5
Sample D Female 127.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
68637611 Antisense, RP_050126_01_C02, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.