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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:35.2 nTPM
HPA:35.2 nTPM
GTEx:50.9 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Pig:89.6 nTPM
Mouse:53.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 35.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.4
2828 Female, age 72, unknown 37.2
1870 Female, age 42, unknown 34.3
2411 Female, age 72, unknown 33.8
1827 Male, age 72, unknown 33.5
2586 Male, age 75, left hemisphere 33.4
1833 Male, age 53, unknown 32.3
1830 Male, age 51, unknown 32.0
2019 Male, age 18, unknown 30.4
2219 Male, age 76, both hemispheres 29.7
2666 Male, age 74, left hemisphere 27.6
Dorsal raphe nucleus
nTPM: 35.2
2298 Female, age 72, unknown 39.7
2016 Female, age 72, unknown 36.6
2750 Male, age 76, both hemispheres 35.0
1828 Male, age 53, unknown 33.9
2047 Male, age 72, unknown 30.7
Inferior colliculus
nTPM: 32.6
2097 Female, age 72, unknown 34.4
1848 Female, age 42, unknown 32.9
2849 Male, age 72, unknown 31.6
1890 Male, age 53, unknown 31.3
Median raphe nucleus
nTPM: 26.9
2220 Male, age 76, midline 26.9
Pedunculopontine tegmental nucleus
nTPM: 30.7
1921 Female, age 85, both hemispheres 32.2
2334 Male, age 80, both hemispheres 31.9
2338 Male, age 61, both hemispheres 28.1
Periaquaductal grey, anterior
nTPM: 33.2
2502 Female, age 75, unknown 34.4
1795 Male, age 51, unknown 33.4
1947 Male, age 18, unknown 31.8
Periaquaductal grey, dorsal
nTPM: 32.4
1840 Male, age 53, unknown 35.3
2464 Female, age 72, unknown 33.7
2850 Male, age 76, both hemispheres 30.9
1831 Male, age 72, unknown 29.7
Periaquaductal grey, lateral
nTPM: 33.9
2053 Male, age 18, unknown 34.8
2140 Male, age 76, both hemispheres 34.3
2272 Male, age 74, both hemispheres 32.5
Pretectal area
nTPM: 33.2
2273 Male, age 74, both hemispheres 36.5
2667 Female, age 75, unknown 35.7
2316 Male, age 76, right hemisphere 35.3
2224 Female, age 72, unknown 34.2
1815 Male, age 53, unknown 33.1
2825 Male, age 18, unknown 33.0
1944 Female, age 72, unknown 32.8
1817 Female, age 42, unknown 32.5
1816 Male, age 51, unknown 31.6
2007 Male, age 72, unknown 30.9
2407 Male, age 75, both hemispheres 30.0
Red nucleus
nTPM: 34.6
2769 Male, age 72, unknown 38.9
2227 Male, age 72, unknown 38.8
1954 Female, age 42, unknown 36.9
2823 Male, age 76, right hemisphere 36.5
2503 Female, age 72, unknown 35.4
1904 Male, age 53, unknown 35.3
1865 Male, age 51, unknown 34.4
2725 Female, age 75, unknown 33.8
1821 Female, age 72, unknown 33.4
2785 Male, age 18, unknown 31.3
2584 Male, age 75, left hemisphere 30.3
2588 Male, age 74, left hemisphere 30.3
Substantia nigra
nTPM: 30.9
2699 Male, age 18, unknown 35.4
1851 Male, age 51, unknown 33.1
2583 Male, age 75, right hemisphere 32.6
2590 Female, age 75, unknown 32.5
1916 Female, age 42, unknown 32.1
1889 Female, age 72, unknown 31.9
2241 Male, age 72, unknown 29.0
2665 Male, age 74, both hemispheres 27.9
1941 Male, age 53, unknown 27.4
2409 Female, age 72, unknown 26.9
Superior colliculus
nTPM: 33.6
1995 Male, age 72, unknown 38.4
1796 Male, age 53, unknown 34.9
1913 Female, age 42, unknown 34.5
1895 Male, age 76, right hemisphere 34.3
2261 Male, age 18, unknown 34.3
2087 Female, age 72, unknown 34.1
2664 Male, age 75, both hemispheres 33.0
1839 Male, age 51, unknown 32.6
2587 Male, age 74, left hemisphere 31.4
2668 Female, age 75, unknown 28.9
Ventral tegmental area
nTPM: 31.7
2410 Female, age 72, unknown 34.0
2021 Male, age 53, unknown 33.0
1915 Female, age 42, unknown 32.7
1942 Male, age 51, unknown 31.3
2218 Male, age 76, both hemispheres 30.3
2223 Female, age 72, unknown 29.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 50.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 50.9
Samples: 139

Max nTPM: 169.3
Min nTPM: 13.7
Std nTPM: 24.7
Median nTPM: 46.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 169.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 146.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 123.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 112.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 104.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 102.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 97.0
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 96.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 95.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 94.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 94.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.8
FF:10158-103A5 76 years, female 20.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 89.6
Pig sample Sample description nTPM
Midbrain
nTPM: 89.6
Samples: 4

Max nTPM: 159.8
Min nTPM: 44.1
Sample A Female 159.8
Sample B Female 106.4
Sample C Male 48.1
Sample D Male 44.1
Periaqueductal gray
nTPM: 80.7
Samples: 3

Max nTPM: 104.2
Min nTPM: 64.7
Sample B Female 104.2
Sample C Male 73.2
Sample D Male 64.7
Substantia nigra
nTPM: 79.9
Samples: 4

Max nTPM: 97.8
Min nTPM: 61.2
Sample A Female 97.8
Sample B Female 89.7
Sample C Male 61.2
Sample D Male 70.7
Superior colliculi
nTPM: 56.3
Samples: 4

Max nTPM: 79.9
Min nTPM: 43.5
Sample A Female 79.9
Sample B Female 43.5
Sample C Male 48.2
Sample D Male 53.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.3
Samples: 4

Max nTPM: 64.6
Min nTPM: 39.4
Sample A Male 64.6
Sample B Male 53.5
Sample C Female 39.4
Sample D Female 55.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70192111 Antisense, RP_050517_01_C07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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