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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:85.2 nTPM
HPA:85.2 nTPM
GTEx:85.2 nTPM
FANTOM5:115.0 Scaled Tags Per Million
Pig:48.6 nTPM
Mouse:172.8 nTPM
Allen mouse:9.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 85.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.4
2411 Female, age 72, unknown 86.3
2019 Male, age 18, unknown 85.5
1827 Male, age 72, unknown 83.4
1870 Female, age 42, unknown 81.6
2219 Male, age 76, both hemispheres 79.8
2828 Female, age 72, unknown 79.7
1833 Male, age 53, unknown 79.3
1830 Male, age 51, unknown 79.0
2666 Male, age 74, left hemisphere 77.0
2586 Male, age 75, left hemisphere 72.2
Dorsal raphe nucleus
nTPM: 82.7
2298 Female, age 72, unknown 87.3
1828 Male, age 53, unknown 82.8
2750 Male, age 76, both hemispheres 82.5
2047 Male, age 72, unknown 82.2
2016 Female, age 72, unknown 78.9
Inferior colliculus
nTPM: 80.5
2097 Female, age 72, unknown 84.0
1890 Male, age 53, unknown 80.2
1848 Female, age 42, unknown 79.2
2849 Male, age 72, unknown 78.5
Median raphe nucleus
nTPM: 84.0
2220 Male, age 76, midline 84.0
Pedunculopontine tegmental nucleus
nTPM: 85.2
2334 Male, age 80, both hemispheres 85.8
2338 Male, age 61, both hemispheres 85.1
1921 Female, age 85, both hemispheres 84.8
Periaquaductal grey, anterior
nTPM: 84.7
1947 Male, age 18, unknown 88.6
1795 Male, age 51, unknown 83.3
2502 Female, age 75, unknown 82.2
Periaquaductal grey, dorsal
nTPM: 79.4
2850 Male, age 76, both hemispheres 80.6
2464 Female, age 72, unknown 79.5
1840 Male, age 53, unknown 79.4
1831 Male, age 72, unknown 78.2
Periaquaductal grey, lateral
nTPM: 80.8
2272 Male, age 74, both hemispheres 84.1
2053 Male, age 18, unknown 79.3
2140 Male, age 76, both hemispheres 78.9
Pretectal area
nTPM: 84.6
2667 Female, age 75, unknown 88.1
1817 Female, age 42, unknown 86.8
1944 Female, age 72, unknown 86.8
1816 Male, age 51, unknown 86.4
2007 Male, age 72, unknown 85.5
2273 Male, age 74, both hemispheres 85.5
2224 Female, age 72, unknown 83.9
1815 Male, age 53, unknown 83.6
2316 Male, age 76, right hemisphere 83.6
2407 Male, age 75, both hemispheres 81.7
2825 Male, age 18, unknown 78.4
Red nucleus
nTPM: 82.3
1821 Female, age 72, unknown 88.2
2785 Male, age 18, unknown 84.7
2823 Male, age 76, right hemisphere 84.0
2503 Female, age 72, unknown 83.0
1865 Male, age 51, unknown 82.7
2769 Male, age 72, unknown 82.6
2725 Female, age 75, unknown 82.3
1904 Male, age 53, unknown 81.9
2227 Male, age 72, unknown 81.9
1954 Female, age 42, unknown 81.4
2588 Male, age 74, left hemisphere 79.0
2584 Male, age 75, left hemisphere 75.5
Substantia nigra
nTPM: 82.0
1916 Female, age 42, unknown 89.6
1889 Female, age 72, unknown 85.7
1851 Male, age 51, unknown 85.2
1941 Male, age 53, unknown 85.2
2241 Male, age 72, unknown 83.2
2590 Female, age 75, unknown 79.5
2665 Male, age 74, both hemispheres 79.2
2409 Female, age 72, unknown 78.7
2699 Male, age 18, unknown 78.3
2583 Male, age 75, right hemisphere 75.6
Superior colliculus
nTPM: 81.5
1895 Male, age 76, right hemisphere 84.9
1796 Male, age 53, unknown 83.6
2668 Female, age 75, unknown 82.6
2587 Male, age 74, left hemisphere 82.5
1913 Female, age 42, unknown 82.1
2087 Female, age 72, unknown 82.1
2261 Male, age 18, unknown 81.5
1839 Male, age 51, unknown 79.6
1995 Male, age 72, unknown 79.3
2664 Male, age 75, both hemispheres 76.7
Ventral tegmental area
nTPM: 82.9
2410 Female, age 72, unknown 87.4
1915 Female, age 42, unknown 84.3
2218 Male, age 76, both hemispheres 83.3
2223 Female, age 72, unknown 81.6
1942 Male, age 51, unknown 81.4
2021 Male, age 53, unknown 79.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.2
Samples: 139

Max nTPM: 140.9
Min nTPM: 52.3
Std nTPM: 16.7
Median nTPM: 83.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 140.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 133.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 128.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 127.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 125.1
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 118.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 116.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 115.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 115.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 114.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 114.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 115.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 115.0
FF:10158-103A5 76 years, female 115.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 48.6
Pig sample Sample description nTPM
Midbrain
nTPM: 45.7
Samples: 4

Max nTPM: 48.4
Min nTPM: 42.9
Sample A Female 46.7
Sample B Female 44.9
Sample C Male 42.9
Sample D Male 48.4
Periaqueductal gray
nTPM: 41.4
Samples: 3

Max nTPM: 45.4
Min nTPM: 37.7
Sample B Female 37.7
Sample C Male 45.4
Sample D Male 41.2
Substantia nigra
nTPM: 42.7
Samples: 4

Max nTPM: 56.0
Min nTPM: 34.9
Sample A Female 56.0
Sample B Female 34.9
Sample C Male 42.7
Sample D Male 37.1
Superior colliculi
nTPM: 48.6
Samples: 4

Max nTPM: 59.1
Min nTPM: 37.9
Sample A Female 59.1
Sample B Female 37.9
Sample C Male 49.7
Sample D Male 47.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 172.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 172.8
Samples: 4

Max nTPM: 177.6
Min nTPM: 166.2
Sample A Male 175.6
Sample B Male 171.8
Sample C Female 166.2
Sample D Female 177.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.1
68798813 Antisense, RP_050217_01_D02, Mouse strain C57BL/6J (56 days, male) 9.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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