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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:15.2 nTPM
HPA:15.2 nTPM
GTEx:15.2 nTPM
FANTOM5:44.0 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:5.4 nTPM
Allen mouse:5.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA051146
Glial cells Not detected
Neuronal cells Not detected


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 14.3
2289 Male, age 61, right hemisphere 14.7
2288 Male, age 75, left hemisphere 14.5
2481 Female, age 94, left hemisphere 14.4
1781 Male, age 74, unknown 14.3
2846 Female, age 79, unknown 14.3
1854 Male, age 80, left hemisphere 14.2
1857 Female, age 85, left hemisphere 14.2
2290 Female, age 72, unknown 13.5
Claustrum
nTPM: 15.2
2645 Female, age 72, unknown 16.1
2292 Female, age 85, both hemispheres 16.0
1956 Male, age 74, unknown 15.4
2568 Male, age 61, both hemispheres 15.4
2284 Female, age 91, both hemispheres 15.3
2196 Female, age 79, unknown 14.9
2198 Male, age 80, both hemispheres 14.9
2491 Male, age 75, both hemispheres 14.5
2392 Female, age 94, both hemispheres 14.0
Globus pallidus, externus
nTPM: 15.1
2646 Male, age 61, right hemisphere 16.8
2567 Female, age 72, unknown 16.6
1996 Male, age 80, right hemisphere 14.2
2772 Female, age 79, unknown 14.2
2395 Male, age 75, both hemispheres 13.9
Globus pallidus, internus
nTPM: 15.2
2566 Female, age 72, unknown 16.1
2483 Female, age 94, right hemisphere 15.5
1818 Male, age 74, unknown 15.2
2111 Female, age 85, right hemisphere 15.2
2778 Female, age 91, both hemispheres 14.9
2037 Male, age 80, right hemisphere 14.8
2287 Male, age 75, right hemisphere 14.3
Nucleus accumbens
nTPM: 14.5
2698 Female, age 72, unknown 15.2
2391 Female, age 94, left hemisphere 14.7
2732 Male, age 80, right hemisphere 14.6
2824 Male, age 61, right hemisphere 14.6
1783 Male, age 74, unknown 14.5
1806 Female, age 85, left hemisphere 14.2
2286 Male, age 75, left hemisphere 14.1
1856 Female, age 91, right hemisphere 13.8
Nucleus basalis of Meynert
nTPM: 15.1
2569 Male, age 61, both hemispheres 16.9
2821 Male, age 75, both hemispheres 15.0
2393 Male, age 80, right hemisphere 14.4
2484 Female, age 94, left hemisphere 14.0
Nucleus of the diagonal band
nTPM: 14.4
1979 Male, age 74, unknown 15.0
2775 Male, age 80, right hemisphere 14.6
2195 Female, age 85, both hemispheres 14.4
2029 Male, age 61, right hemisphere 14.2
1812 Female, age 91, both hemispheres 13.9
Olfactory tubercle
nTPM: 14.4
2856 Male, age 75, right hemisphere 14.8
1998 Female, age 91, both hemispheres 14.5
2487 Female, age 94, left hemisphere 14.4
1846 Male, age 80, right hemisphere 14.2
Putamen
nTPM: 14.9
2647 Male, age 75, left hemisphere 16.5
2489 Female, age 72, unknown 15.8
2482 Female, age 94, left hemisphere 15.0
1829 Male, age 74, unknown 14.5
1838 Male, age 80, right hemisphere 14.3
1937 Female, age 91, right hemisphere 14.1
2466 Female, age 79, unknown 14.1
Septal nuclei
nTPM: 14.5
2199 Male, age 80, right hemisphere 15.5
2629 Female, age 94, right hemisphere 15.2
2059 Female, age 85, both hemispheres 14.8
1960 Male, age 74, unknown 14.3
2394 Male, age 61, left hemisphere 14.3
2009 Female, age 91, both hemispheres 14.1
2031 Female, age 72, unknown 13.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 15.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 13.9
Samples: 246

Max nTPM: 24.9
Min nTPM: 5.0
Std nTPM: 3.0
Median nTPM: 13.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 24.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 24.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 24.6
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 20.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 20.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 20.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 20.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 20.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 19.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 19.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 19.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 15.0
Samples: 246

Max nTPM: 27.9
Min nTPM: 5.3
Std nTPM: 3.4
Median nTPM: 14.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 27.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 25.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 24.0
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 23.9
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 23.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 22.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 22.6
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 22.5
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 21.6
GTEX-1I1GS-0011-R6b-SM-CMKHE 60-69 years, male 21.5
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 21.0
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Brain - Putamen (basal ganglia)
Average nTPM: 15.2
Samples: 205

Max nTPM: 22.7
Min nTPM: 7.4
Std nTPM: 3.3
Median nTPM: 15.3
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 22.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 22.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 22.3
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 21.9
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 21.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 21.2
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 21.1
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 21.0
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 21.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 20.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 20.6
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 44.0
FF:10164-103B2 76 years, female 44.0
Globus pallidus
Scaled Tags Per Million: 36.7
FF:10161-103A8 76 years, female 37.2
FF:10175-103C4 60 years, female 36.3
Nucleus accumbens
Scaled Tags Per Million: 30.8
FF:10037-101F1 23-56 years, mixed 30.8
Putamen
Scaled Tags Per Million: 41.3
FF:10176-103C5 60 years, female 41.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.6
Pig sample Sample description nTPM
Caudate
nTPM: 3.5
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.3
Sample A Female 3.3
Sample B Female 3.6
Sample C Male 3.3
Sample D Male 3.9
Putamen
nTPM: 3.5
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.9
Sample A Female 3.5
Sample B Female 4.1
Sample C Male 2.9
Sample D Male 3.5
Septum
nTPM: 3.6
Samples: 4

Max nTPM: 4.0
Min nTPM: 2.9
Sample A Female 3.6
Sample B Female 4.0
Sample C Male 2.9
Sample D Male 4.0
Ventral pallidum
nTPM: 3.6
Samples: 4

Max nTPM: 3.9
Min nTPM: 3.2
Sample A Female 3.2
Sample B Female 3.7
Sample C Male 3.4
Sample D Male 3.9

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.4
Samples: 4

Max nTPM: 5.6
Min nTPM: 4.7
Sample A Male 5.6
Sample B Male 5.6
Sample C Female 5.6
Sample D Female 4.7
Septum
nTPM: 5.3
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.5
Sample A Male 5.7
Sample B Male 5.6
Sample C Female 4.5
Sample D Female 5.5
Ventral forebrain
nTPM: 5.4
Samples: 4

Max nTPM: 6.3
Min nTPM: 4.2
Sample A Male 5.5
Sample B Male 5.5
Sample C Female 4.2
Sample D Female 6.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 5.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 5.3
68545539 Antisense, RP_050120_01_B03, Mouse strain C57BL/6J (56 days, male) 5.3
Pallidum
Expression energy: 4.2
68545539 Antisense, RP_050120_01_B03, Mouse strain C57BL/6J (56 days, male) 4.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.