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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.2 nTPM
HPA:54.2 nTPM
GTEx:35.0 nTPM
FANTOM5:33.4 Scaled Tags Per Million
Pig:93.9 nTPM
Mouse:88.6 nTPM
Allen mouse:8.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.3
2019 Male, age 18, unknown 50.5
1827 Male, age 72, unknown 35.5
2219 Male, age 76, both hemispheres 32.9
2666 Male, age 74, left hemisphere 31.3
2828 Female, age 72, unknown 25.4
2586 Male, age 75, left hemisphere 25.3
2411 Female, age 72, unknown 17.5
1870 Female, age 42, unknown 15.8
1833 Male, age 53, unknown 15.4
1830 Male, age 51, unknown 13.4
Dorsal raphe nucleus
nTPM: 14.2
2298 Female, age 72, unknown 20.1
2750 Male, age 76, both hemispheres 15.7
1828 Male, age 53, unknown 14.4
2047 Male, age 72, unknown 11.2
2016 Female, age 72, unknown 9.6
Inferior colliculus
nTPM: 16.7
2097 Female, age 72, unknown 21.3
1890 Male, age 53, unknown 17.3
1848 Female, age 42, unknown 14.3
2849 Male, age 72, unknown 13.6
Median raphe nucleus
nTPM: 19.5
2220 Male, age 76, midline 19.5
Pedunculopontine tegmental nucleus
nTPM: 21.1
1921 Female, age 85, both hemispheres 25.6
2334 Male, age 80, both hemispheres 20.8
2338 Male, age 61, both hemispheres 16.8
Periaquaductal grey, anterior
nTPM: 22.0
1795 Male, age 51, unknown 35.4
2502 Female, age 75, unknown 20.3
1947 Male, age 18, unknown 10.2
Periaquaductal grey, dorsal
nTPM: 20.5
1831 Male, age 72, unknown 31.0
2850 Male, age 76, both hemispheres 18.2
1840 Male, age 53, unknown 16.5
2464 Female, age 72, unknown 16.1
Periaquaductal grey, lateral
nTPM: 18.3
2053 Male, age 18, unknown 20.9
2272 Male, age 74, both hemispheres 18.5
2140 Male, age 76, both hemispheres 15.6
Pretectal area
nTPM: 54.2
1816 Male, age 51, unknown 108.8
1944 Female, age 72, unknown 98.0
1815 Male, age 53, unknown 90.0
1817 Female, age 42, unknown 87.5
2007 Male, age 72, unknown 82.7
2273 Male, age 74, both hemispheres 27.8
2407 Male, age 75, both hemispheres 26.5
2667 Female, age 75, unknown 26.4
2224 Female, age 72, unknown 17.9
2316 Male, age 76, right hemisphere 17.7
2825 Male, age 18, unknown 13.0
Red nucleus
nTPM: 16.9
2785 Male, age 18, unknown 51.5
2584 Male, age 75, left hemisphere 29.4
2725 Female, age 75, unknown 20.2
2588 Male, age 74, left hemisphere 16.9
2503 Female, age 72, unknown 12.3
2823 Male, age 76, right hemisphere 11.9
1904 Male, age 53, unknown 10.9
1821 Female, age 72, unknown 10.8
1865 Male, age 51, unknown 10.4
2769 Male, age 72, unknown 9.5
1954 Female, age 42, unknown 9.4
2227 Male, age 72, unknown 9.4
Substantia nigra
nTPM: 22.1
1889 Female, age 72, unknown 58.6
2665 Male, age 74, both hemispheres 23.3
2583 Male, age 75, right hemisphere 21.4
1851 Male, age 51, unknown 21.1
1916 Female, age 42, unknown 21.0
1941 Male, age 53, unknown 17.9
2590 Female, age 75, unknown 16.8
2409 Female, age 72, unknown 16.0
2241 Male, age 72, unknown 12.9
2699 Male, age 18, unknown 11.8
Superior colliculus
nTPM: 34.7
2087 Female, age 72, unknown 65.8
1913 Female, age 42, unknown 42.4
1796 Male, age 53, unknown 41.3
2668 Female, age 75, unknown 39.7
2261 Male, age 18, unknown 37.4
1995 Male, age 72, unknown 35.9
2664 Male, age 75, both hemispheres 28.3
1895 Male, age 76, right hemisphere 21.3
2587 Male, age 74, left hemisphere 20.2
1839 Male, age 51, unknown 14.2
Ventral tegmental area
nTPM: 16.5
2218 Male, age 76, both hemispheres 22.3
2410 Female, age 72, unknown 19.7
1942 Male, age 51, unknown 17.4
1915 Female, age 42, unknown 16.1
2021 Male, age 53, unknown 13.8
2223 Female, age 72, unknown 9.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.0
Samples: 139

Max nTPM: 129.0
Min nTPM: 6.6
Std nTPM: 25.0
Median nTPM: 25.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 129.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 120.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 100.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 89.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 89.0
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 87.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 86.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 84.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 83.5
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 81.6
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 80.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 33.4
FF:10158-103A5 76 years, female 33.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 93.9
Pig sample Sample description nTPM
Midbrain
nTPM: 74.0
Samples: 4

Max nTPM: 218.0
Min nTPM: 20.9
Sample A Female 26.5
Sample B Female 20.9
Sample C Male 218.0
Sample D Male 30.4
Periaqueductal gray
nTPM: 21.0
Samples: 3

Max nTPM: 24.8
Min nTPM: 18.5
Sample B Female 19.6
Sample C Male 24.8
Sample D Male 18.5
Substantia nigra
nTPM: 25.9
Samples: 4

Max nTPM: 39.7
Min nTPM: 11.4
Sample A Female 39.7
Sample B Female 19.0
Sample C Male 33.3
Sample D Male 11.4
Superior colliculi
nTPM: 93.9
Samples: 4

Max nTPM: 206.7
Min nTPM: 38.9
Sample A Female 38.9
Sample B Female 73.3
Sample C Male 206.7
Sample D Male 56.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.6
Samples: 4

Max nTPM: 91.4
Min nTPM: 85.7
Sample A Male 91.4
Sample B Male 85.7
Sample C Female 89.6
Sample D Female 87.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.0
67936411 Antisense, RP_040617_01_E09, Mouse strain C57BL/6J (56 days, male) 8.0
324214 Antisense, RP_040617_01_E09, Mouse strain C57BL/6J (56 days, male) 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.