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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:3.1 nTPM
HPA:3.1 nTPM
GTEx:3.7 nTPM
FANTOM5:1.9 Scaled Tags Per Million
Pig:0.5 nTPM
Mouse:1.0 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA073693
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 3.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 2.3
2481 Female, age 94, left hemisphere 4.6
2289 Male, age 61, right hemisphere 3.1
2288 Male, age 75, left hemisphere 3.0
2290 Female, age 72, unknown 2.3
1854 Male, age 80, left hemisphere 1.5
1857 Female, age 85, left hemisphere 1.5
2846 Female, age 79, unknown 1.5
1781 Male, age 74, unknown 0.5
Claustrum
nTPM: 0.3
2196 Female, age 79, unknown 0.8
2392 Female, age 94, both hemispheres 0.4
2491 Male, age 75, both hemispheres 0.3
2568 Male, age 61, both hemispheres 0.3
2645 Female, age 72, unknown 0.3
2198 Male, age 80, both hemispheres 0.2
2284 Female, age 91, both hemispheres 0.2
1956 Male, age 74, unknown 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 3.1
2646 Male, age 61, right hemisphere 4.3
2772 Female, age 79, unknown 3.5
1996 Male, age 80, right hemisphere 3.3
2567 Female, age 72, unknown 2.5
2395 Male, age 75, both hemispheres 2.1
Globus pallidus, internus
nTPM: 2.3
2287 Male, age 75, right hemisphere 3.0
2483 Female, age 94, right hemisphere 2.9
2037 Male, age 80, right hemisphere 2.6
2778 Female, age 91, both hemispheres 2.2
1818 Male, age 74, unknown 2.0
2566 Female, age 72, unknown 1.9
2111 Female, age 85, right hemisphere 1.8
Nucleus accumbens
nTPM: 1.5
2286 Male, age 75, left hemisphere 3.0
2391 Female, age 94, left hemisphere 2.6
1806 Female, age 85, left hemisphere 2.0
2698 Female, age 72, unknown 1.2
2732 Male, age 80, right hemisphere 1.2
1783 Male, age 74, unknown 0.9
2824 Male, age 61, right hemisphere 0.9
1856 Female, age 91, right hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 2.4
2569 Male, age 61, both hemispheres 5.1
2484 Female, age 94, left hemisphere 2.2
2821 Male, age 75, both hemispheres 1.4
2393 Male, age 80, right hemisphere 0.9
Nucleus of the diagonal band
nTPM: 0.5
1979 Male, age 74, unknown 2.7
1812 Female, age 91, both hemispheres 0.1
2029 Male, age 61, right hemisphere 0.0
2195 Female, age 85, both hemispheres 0.0
2775 Male, age 80, right hemisphere 0.0
Olfactory tubercle
nTPM: 0.2
1846 Male, age 80, right hemisphere 0.9
2856 Male, age 75, right hemisphere 0.1
1998 Female, age 91, both hemispheres 0.0
2487 Female, age 94, left hemisphere 0.0
Putamen
nTPM: 1.9
2647 Male, age 75, left hemisphere 3.0
2489 Female, age 72, unknown 2.8
2482 Female, age 94, left hemisphere 2.7
2466 Female, age 79, unknown 1.5
1829 Male, age 74, unknown 1.4
1838 Male, age 80, right hemisphere 1.0
1937 Female, age 91, right hemisphere 0.9
Septal nuclei
nTPM: 0.6
2394 Male, age 61, left hemisphere 2.1
2199 Male, age 80, right hemisphere 2.0
2009 Female, age 91, both hemispheres 0.2
2059 Female, age 85, both hemispheres 0.2
1960 Male, age 74, unknown 0.0
2031 Female, age 72, unknown 0.0
2629 Female, age 94, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 3.7
Samples: 246

Max nTPM: 12.0
Min nTPM: 0.1
Std nTPM: 1.9
Median nTPM: 3.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 12.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 10.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 10.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 9.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 8.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 8.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 8.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 8.1
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 7.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 7.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.4
Samples: 246

Max nTPM: 8.9
Min nTPM: 0.2
Std nTPM: 1.4
Median nTPM: 1.9
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 8.9
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 7.3
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 6.9
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 6.8
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 6.6
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 6.2
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 6.0
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 5.6
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 5.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 5.4
GTEX-15EO6-0011-R6a-SM-7KULK 50-59 years, male 5.4
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Brain - Putamen (basal ganglia)
Average nTPM: 2.9
Samples: 205

Max nTPM: 8.1
Min nTPM: 0.3
Std nTPM: 1.4
Median nTPM: 2.5
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 8.1
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 7.2
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 6.7
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 6.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 6.6
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 6.3
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 6.2
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 6.1
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 6.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 5.9
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 5.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.9
FF:10164-103B2 76 years, female 0.9
Globus pallidus
Scaled Tags Per Million: 1.9
FF:10175-103C4 60 years, female 2.3
FF:10161-103A8 76 years, female 1.6
Nucleus accumbens
Scaled Tags Per Million: 0.7
FF:10037-101F1 23-56 years, mixed 0.7
Putamen
Scaled Tags Per Million: 0.6
FF:10176-103C5 60 years, female 0.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.5
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Septum
nTPM: 0.5
Samples: 4

Max nTPM: 1.8
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.1
Sample C Male 1.8
Sample D Male 0.0
Ventral pallidum
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.2
Sample D Male 0.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 1.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.1
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.3
Min nTPM: 0.5
Sample A Male 1.3
Sample B Male 0.5
Sample C Female 0.8
Sample D Female 1.3
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.1
Sample B Male 0.3
Sample C Female 0.0
Sample D Female 0.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
80342037 Antisense, RP_071204_04_B04, Mouse strain C57BL/6J (56 days, male) 0.0
72283796 Antisense, RP_051027_01_A12, Mouse strain C57BL/6J (56 days, male) 0.0
70593146 Antisense, RP_050407_01_A04, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
80342037 Antisense, RP_071204_04_B04, Mouse strain C57BL/6J (56 days, male) 0.0
72283796 Antisense, RP_051027_01_A12, Mouse strain C57BL/6J (56 days, male) 0.0
70593146 Antisense, RP_050407_01_A04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.