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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA013562
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA014083
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 91.7
Min nTPM: 12.2
Std nTPM: 17.3
Median nTPM:
375_1
74 years, female
91.7
321_1
62 years, female
88.7
379_1
60 years, male
88.0
350_1
84 years, female
78.9
173_1
67 years, male
77.8
145_1
84 years, male
72.8
172_1
72 years, female
72.6
218_1
71 years, female
72.1
318_1
68 years, male
71.9
99_1
64 years, male
68.9
352_1
62 years, male
68.3
177_1
74 years, male
67.9
319_1
81 years, male
64.6
6_1
73 years, female
60.0
406_1
79 years, male
58.6
354_1
81 years, female
57.6
265_1
87 years, male
56.1
322_1
76 years, male
55.7
386_1
76 years, male
54.9
293_1
68 years, female
54.5
137_1
83 years, male
54.4
353_1
82 years, female
53.6
351_1
91 years, male
52.5
286_1
68 years, female
52.3
425_1
59 years, female
50.8
237_1
82 years, male
48.8
35_1
74 years, female
48.0
347_1
72 years, male
48.0
384_1
83 years, male
48.0
153_1
70 years, female
47.9
292_1
71 years, male
47.9
503_1
68 years, male
47.7
229_1
69 years, female
47.2
447_1
81 years, male
46.3
355_1
70 years, female
46.2
480_1
63 years, male
46.1
163_1
78 years, male
45.5
243_1
75 years, male
44.9
251_1
78 years, male
44.9
452_1
88 years, female
44.2
335_1
73 years, female
43.5
348_1
84 years, male
42.9
396_1
62 years, male
42.5
349_1
83 years, male
42.0
404_1
82 years, female
41.6
246_1
77 years, male
41.1
18_1
88 years, male
40.8
109_1
81 years, female
40.4
295_1
61 years, female
40.0
506_1
65 years, male
40.0
9_1
66 years, female
39.5
320_1
89 years, female
38.4
377_1
82 years, female
38.4
17_1
71 years, male
37.9
120_1
70 years, female
37.9
317_1
60 years, male
37.1
217_1
76 years, male
36.9
162_1
79 years, female
36.7
313_1
79 years, female
36.7
41_1
94 years, female
36.6
119_1
70 years, female
35.6
526_1
61 years, male
35.3
254_1
77 years, female
32.8
42_1
85 years, male
32.6
311_1
78 years, male
32.6
4_1
88 years, female
32.1
288_1
66 years, female
31.8
32_1
67 years, male
31.3
43_1
64 years, female
31.3
394_1
75 years, female
31.3
189_1
76 years, male
31.2
117_1
61 years, male
31.1
264_1
73 years, female
31.1
2_1
77 years, female
30.8
307_1
66 years, female
30.8
316_1
62 years, male
30.1
468_1
89 years, male
29.8
81_1
67 years, male
28.8
466_1
57 years, female
28.0
517_1
88 years, male
27.6
324_1
76 years, male
26.6
115_1
83 years, male
26.1
389_1
86 years, female
26.1
518_1
75 years, female
26.1
405_1
91 years, male
25.4
315_1
62 years, female
25.3
89_1
63 years, male
25.2
291_1
76 years, male
25.1
314_1
67 years, male
24.5
499_1
55 years, female
23.7
266_1
85 years, male
23.3
126_1
63 years, male
22.9
308_1
70 years, female
22.6
414_1
84 years, female
21.6
142_1
61 years, female
21.3
139_1
64 years, female
21.0
376_1
75 years, female
20.3
415_1
77 years, female
19.6
495_1
57 years, female
19.1
356_1
87 years, female
19.0
490_1
67 years, female
19.0
413_1
59 years, female
16.7
501_1
88 years, male
13.2
149_1
88 years, male
12.7
491_1
89 years, female
12.2
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
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