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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:40.8 nTPM
HPA:40.8 nTPM
GTEx:44.6 nTPM
FANTOM5:85.0 Scaled Tags Per Million
Pig:35.5 nTPM
Mouse:34.5 nTPM
Allen mouse:3.3 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041391Antibody HPA044250
Glial cells MediumNot detected
Neuronal cells MediumNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.0
2289 Male, age 61, right hemisphere 45.0
1854 Male, age 80, left hemisphere 39.9
1857 Female, age 85, left hemisphere 39.2
2290 Female, age 72, unknown 38.9
2288 Male, age 75, left hemisphere 36.4
1781 Male, age 74, unknown 36.0
2481 Female, age 94, left hemisphere 34.4
2846 Female, age 79, unknown 34.1
Claustrum
nTPM: 34.4
2292 Female, age 85, both hemispheres 38.5
2568 Male, age 61, both hemispheres 37.3
2645 Female, age 72, unknown 35.5
2198 Male, age 80, both hemispheres 34.3
2491 Male, age 75, both hemispheres 33.3
1956 Male, age 74, unknown 33.1
2196 Female, age 79, unknown 33.0
2392 Female, age 94, both hemispheres 32.5
2284 Female, age 91, both hemispheres 32.3
Globus pallidus, externus
nTPM: 40.8
2567 Female, age 72, unknown 44.6
2646 Male, age 61, right hemisphere 43.9
1996 Male, age 80, right hemisphere 42.3
2772 Female, age 79, unknown 37.6
2395 Male, age 75, both hemispheres 35.5
Globus pallidus, internus
nTPM: 40.5
2037 Male, age 80, right hemisphere 44.0
2778 Female, age 91, both hemispheres 43.8
2111 Female, age 85, right hemisphere 42.1
2483 Female, age 94, right hemisphere 40.0
1818 Male, age 74, unknown 38.7
2566 Female, age 72, unknown 37.9
2287 Male, age 75, right hemisphere 37.1
Nucleus accumbens
nTPM: 38.9
2824 Male, age 61, right hemisphere 44.9
1783 Male, age 74, unknown 41.2
1806 Female, age 85, left hemisphere 40.8
2732 Male, age 80, right hemisphere 40.5
2286 Male, age 75, left hemisphere 37.2
1856 Female, age 91, right hemisphere 36.6
2391 Female, age 94, left hemisphere 35.0
2698 Female, age 72, unknown 35.0
Nucleus basalis of Meynert
nTPM: 37.0
2569 Male, age 61, both hemispheres 42.9
2393 Male, age 80, right hemisphere 37.8
2484 Female, age 94, left hemisphere 36.1
2821 Male, age 75, both hemispheres 31.2
Nucleus of the diagonal band
nTPM: 35.7
1979 Male, age 74, unknown 41.9
2029 Male, age 61, right hemisphere 37.4
2195 Female, age 85, both hemispheres 35.2
2775 Male, age 80, right hemisphere 32.3
1812 Female, age 91, both hemispheres 31.5
Olfactory tubercle
nTPM: 32.5
1998 Female, age 91, both hemispheres 33.6
1846 Male, age 80, right hemisphere 33.1
2856 Male, age 75, right hemisphere 31.9
2487 Female, age 94, left hemisphere 31.3
Putamen
nTPM: 36.7
1838 Male, age 80, right hemisphere 39.6
2466 Female, age 79, unknown 38.6
1937 Female, age 91, right hemisphere 38.1
2489 Female, age 72, unknown 35.7
2647 Male, age 75, left hemisphere 35.6
2482 Female, age 94, left hemisphere 35.1
1829 Male, age 74, unknown 34.1
Septal nuclei
nTPM: 35.3
2059 Female, age 85, both hemispheres 40.4
2199 Male, age 80, right hemisphere 37.1
1960 Male, age 74, unknown 36.5
2394 Male, age 61, left hemisphere 35.8
2031 Female, age 72, unknown 34.0
2009 Female, age 91, both hemispheres 33.7
2629 Female, age 94, right hemisphere 29.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 44.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.8
Samples: 246

Max nTPM: 64.3
Min nTPM: 28.6
Std nTPM: 6.9
Median nTPM: 43.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 64.3
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 63.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 61.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 59.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 58.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 58.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 58.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 58.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 58.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 57.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 57.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 44.6
Samples: 246

Max nTPM: 83.3
Min nTPM: 27.1
Std nTPM: 7.3
Median nTPM: 43.6
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 83.3
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 73.8
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 65.2
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 63.7
GTEX-13OW8-0011-R6b-SM-5L3I3 60-69 years, male 62.6
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 62.3
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 61.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 61.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 60.1
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 60.1
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 59.0
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Brain - Putamen (basal ganglia)
Average nTPM: 43.3
Samples: 205

Max nTPM: 69.7
Min nTPM: 23.8
Std nTPM: 7.7
Median nTPM: 42.4
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 69.7
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 66.2
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 65.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 65.0
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 61.5
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 60.4
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 60.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 60.3
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 59.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 59.7
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 59.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 64.7
FF:10164-103B2 76 years, female 64.7
Globus pallidus
Scaled Tags Per Million: 80.4
FF:10175-103C4 60 years, female 102.6
FF:10161-103A8 76 years, female 58.3
Nucleus accumbens
Scaled Tags Per Million: 67.4
FF:10037-101F1 23-56 years, mixed 67.4
Putamen
Scaled Tags Per Million: 85.0
FF:10176-103C5 60 years, female 85.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 35.5
Pig sample Sample description nTPM
Caudate
nTPM: 33.0
Samples: 4

Max nTPM: 38.2
Min nTPM: 29.9
Sample A Female 31.5
Sample B Female 29.9
Sample C Male 38.2
Sample D Male 32.3
Putamen
nTPM: 30.9
Samples: 4

Max nTPM: 35.8
Min nTPM: 21.6
Sample A Female 35.8
Sample B Female 21.6
Sample C Male 34.5
Sample D Male 31.7
Septum
nTPM: 35.5
Samples: 4

Max nTPM: 39.2
Min nTPM: 27.8
Sample A Female 38.6
Sample B Female 27.8
Sample C Male 36.4
Sample D Male 39.2
Ventral pallidum
nTPM: 33.7
Samples: 4

Max nTPM: 43.1
Min nTPM: 27.3
Sample A Female 29.8
Sample B Female 27.3
Sample C Male 43.1
Sample D Male 34.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 34.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.9
Samples: 4

Max nTPM: 36.6
Min nTPM: 31.0
Sample A Male 35.2
Sample B Male 32.8
Sample C Female 36.6
Sample D Female 31.0
Septum
nTPM: 34.5
Samples: 4

Max nTPM: 36.4
Min nTPM: 32.0
Sample A Male 32.0
Sample B Male 35.3
Sample C Female 34.3
Sample D Female 36.4
Ventral forebrain
nTPM: 32.2
Samples: 4

Max nTPM: 33.4
Min nTPM: 31.2
Sample A Male 32.8
Sample B Male 33.4
Sample C Female 31.2
Sample D Female 31.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.3
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.3
71610855 Antisense, RP_050927_02_A04, Mouse strain C57BL/6J (56 days, male) 2.3
Pallidum
Expression energy: 3.3
71610855 Antisense, RP_050927_02_A04, Mouse strain C57BL/6J (56 days, male) 3.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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