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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.8 nTPM
HPA:38.8 nTPM
GTEx:40.3 nTPM
FANTOM5:61.5 Scaled Tags Per Million
Pig:42.0 nTPM
Mouse:36.9 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.9
2586 Male, age 75, left hemisphere 43.1
2828 Female, age 72, unknown 41.2
2411 Female, age 72, unknown 39.0
1833 Male, age 53, unknown 38.0
1827 Male, age 72, unknown 37.9
1830 Male, age 51, unknown 37.9
1870 Female, age 42, unknown 37.2
2019 Male, age 18, unknown 36.8
2219 Male, age 76, both hemispheres 34.7
2666 Male, age 74, left hemisphere 32.8
Dorsal raphe nucleus
nTPM: 37.7
2016 Female, age 72, unknown 39.3
2750 Male, age 76, both hemispheres 38.8
2298 Female, age 72, unknown 37.5
2047 Male, age 72, unknown 36.6
1828 Male, age 53, unknown 36.3
Inferior colliculus
nTPM: 37.9
2097 Female, age 72, unknown 39.5
1890 Male, age 53, unknown 38.7
1848 Female, age 42, unknown 37.1
2849 Male, age 72, unknown 36.5
Median raphe nucleus
nTPM: 35.3
2220 Male, age 76, midline 35.3
Pedunculopontine tegmental nucleus
nTPM: 34.1
1921 Female, age 85, both hemispheres 35.4
2334 Male, age 80, both hemispheres 34.9
2338 Male, age 61, both hemispheres 31.9
Periaquaductal grey, anterior
nTPM: 37.4
2502 Female, age 75, unknown 39.8
1795 Male, age 51, unknown 36.6
1947 Male, age 18, unknown 35.9
Periaquaductal grey, dorsal
nTPM: 35.7
2464 Female, age 72, unknown 38.1
1831 Male, age 72, unknown 35.2
1840 Male, age 53, unknown 35.2
2850 Male, age 76, both hemispheres 34.1
Periaquaductal grey, lateral
nTPM: 36.9
2140 Male, age 76, both hemispheres 38.1
2053 Male, age 18, unknown 36.8
2272 Male, age 74, both hemispheres 35.9
Pretectal area
nTPM: 37.0
2316 Male, age 76, right hemisphere 41.8
2667 Female, age 75, unknown 40.9
2825 Male, age 18, unknown 37.7
2407 Male, age 75, both hemispheres 37.3
2273 Male, age 74, both hemispheres 37.2
2224 Female, age 72, unknown 36.9
1815 Male, age 53, unknown 36.6
1817 Female, age 42, unknown 35.5
1816 Male, age 51, unknown 35.4
2007 Male, age 72, unknown 34.2
1944 Female, age 72, unknown 33.2
Red nucleus
nTPM: 38.8
1904 Male, age 53, unknown 41.7
2227 Male, age 72, unknown 41.6
2823 Male, age 76, right hemisphere 40.5
2588 Male, age 74, left hemisphere 40.1
2503 Female, age 72, unknown 40.0
1865 Male, age 51, unknown 39.7
2769 Male, age 72, unknown 39.4
2785 Male, age 18, unknown 37.3
1954 Female, age 42, unknown 36.9
1821 Female, age 72, unknown 36.7
2725 Female, age 75, unknown 35.9
2584 Male, age 75, left hemisphere 35.7
Substantia nigra
nTPM: 35.1
2590 Female, age 75, unknown 38.6
2665 Male, age 74, both hemispheres 38.3
2699 Male, age 18, unknown 38.1
1851 Male, age 51, unknown 36.9
2583 Male, age 75, right hemisphere 35.4
2241 Male, age 72, unknown 34.4
1889 Female, age 72, unknown 33.9
1916 Female, age 42, unknown 33.8
2409 Female, age 72, unknown 31.2
1941 Male, age 53, unknown 30.2
Superior colliculus
nTPM: 37.8
2664 Male, age 75, both hemispheres 41.8
1995 Male, age 72, unknown 40.8
1913 Female, age 42, unknown 39.0
1895 Male, age 76, right hemisphere 38.7
1796 Male, age 53, unknown 38.1
2087 Female, age 72, unknown 37.8
2261 Male, age 18, unknown 37.7
2587 Male, age 74, left hemisphere 36.7
1839 Male, age 51, unknown 36.3
2668 Female, age 75, unknown 31.3
Ventral tegmental area
nTPM: 36.5
2021 Male, age 53, unknown 40.0
1942 Male, age 51, unknown 37.1
2410 Female, age 72, unknown 37.0
2223 Female, age 72, unknown 36.1
2218 Male, age 76, both hemispheres 34.9
1915 Female, age 42, unknown 34.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.3
Samples: 139

Max nTPM: 85.0
Min nTPM: 19.8
Std nTPM: 10.0
Median nTPM: 39.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 85.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 76.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 68.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 67.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 67.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 62.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 61.2
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 58.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 58.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 57.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 57.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 61.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.5
FF:10158-103A5 76 years, female 61.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.0
Pig sample Sample description nTPM
Midbrain
nTPM: 41.0
Samples: 4

Max nTPM: 54.6
Min nTPM: 27.3
Sample A Female 54.6
Sample B Female 27.3
Sample C Male 43.2
Sample D Male 38.9
Periaqueductal gray
nTPM: 32.7
Samples: 3

Max nTPM: 36.0
Min nTPM: 27.1
Sample B Female 27.1
Sample C Male 36.0
Sample D Male 35.1
Substantia nigra
nTPM: 42.0
Samples: 4

Max nTPM: 50.6
Min nTPM: 29.4
Sample A Female 50.6
Sample B Female 29.4
Sample C Male 43.9
Sample D Male 44.1
Superior colliculi
nTPM: 39.1
Samples: 4

Max nTPM: 46.8
Min nTPM: 30.2
Sample A Female 46.8
Sample B Female 30.2
Sample C Male 39.5
Sample D Male 39.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.9
Samples: 4

Max nTPM: 38.3
Min nTPM: 35.5
Sample A Male 36.2
Sample B Male 35.5
Sample C Female 37.4
Sample D Female 38.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
71610855 Antisense, RP_050927_02_A04, Mouse strain C57BL/6J (56 days, male) 3.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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