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PSMA1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:56.6 nTPM
HPA:56.6 nTPM
GTEx:43.4 nTPM
FANTOM5:101.4 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:151.6 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 56.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 50.8
2411 Female, age 72, unknown 54.4
1827 Male, age 72, unknown 52.6
1870 Female, age 42, unknown 52.3
2019 Male, age 18, unknown 51.9
1833 Male, age 53, unknown 51.3
2219 Male, age 76, both hemispheres 50.6
1830 Male, age 51, unknown 49.0
2828 Female, age 72, unknown 48.9
2586 Male, age 75, left hemisphere 48.7
2666 Male, age 74, left hemisphere 48.1
Dorsal raphe nucleus
nTPM: 53.6
2298 Female, age 72, unknown 60.3
2047 Male, age 72, unknown 54.1
2750 Male, age 76, both hemispheres 53.7
1828 Male, age 53, unknown 50.8
2016 Female, age 72, unknown 49.0
Inferior colliculus
nTPM: 52.2
2097 Female, age 72, unknown 55.6
1848 Female, age 42, unknown 52.4
1890 Male, age 53, unknown 51.0
2849 Male, age 72, unknown 50.0
Median raphe nucleus
nTPM: 54.9
2220 Male, age 76, midline 54.9
Pedunculopontine tegmental nucleus
nTPM: 54.6
2334 Male, age 80, both hemispheres 55.1
1921 Female, age 85, both hemispheres 54.9
2338 Male, age 61, both hemispheres 53.8
Periaquaductal grey, anterior
nTPM: 53.1
1947 Male, age 18, unknown 55.3
2502 Female, age 75, unknown 52.6
1795 Male, age 51, unknown 51.3
Periaquaductal grey, dorsal
nTPM: 50.7
1840 Male, age 53, unknown 52.9
2850 Male, age 76, both hemispheres 51.3
2464 Female, age 72, unknown 49.9
1831 Male, age 72, unknown 48.9
Periaquaductal grey, lateral
nTPM: 51.6
2272 Male, age 74, both hemispheres 54.7
2053 Male, age 18, unknown 50.2
2140 Male, age 76, both hemispheres 49.7
Pretectal area
nTPM: 53.0
1944 Female, age 72, unknown 58.1
1816 Male, age 51, unknown 56.3
2007 Male, age 72, unknown 55.5
2273 Male, age 74, both hemispheres 54.5
1817 Female, age 42, unknown 54.4
2224 Female, age 72, unknown 54.4
1815 Male, age 53, unknown 53.3
2667 Female, age 75, unknown 52.2
2825 Male, age 18, unknown 50.6
2316 Male, age 76, right hemisphere 47.0
2407 Male, age 75, both hemispheres 46.3
Red nucleus
nTPM: 49.2
1821 Female, age 72, unknown 53.9
2725 Female, age 75, unknown 52.7
1954 Female, age 42, unknown 50.6
2785 Male, age 18, unknown 50.2
1865 Male, age 51, unknown 49.5
1904 Male, age 53, unknown 49.1
2503 Female, age 72, unknown 49.0
2769 Male, age 72, unknown 47.9
2823 Male, age 76, right hemisphere 47.7
2227 Male, age 72, unknown 47.4
2584 Male, age 75, left hemisphere 46.5
2588 Male, age 74, left hemisphere 46.5
Substantia nigra
nTPM: 56.6
2241 Male, age 72, unknown 63.9
2409 Female, age 72, unknown 63.2
1916 Female, age 42, unknown 61.1
1851 Male, age 51, unknown 58.5
1941 Male, age 53, unknown 57.1
1889 Female, age 72, unknown 56.5
2590 Female, age 75, unknown 53.0
2699 Male, age 18, unknown 52.9
2665 Male, age 74, both hemispheres 50.0
2583 Male, age 75, right hemisphere 49.8
Superior colliculus
nTPM: 50.3
1796 Male, age 53, unknown 53.1
2587 Male, age 74, left hemisphere 52.6
2087 Female, age 72, unknown 51.9
1895 Male, age 76, right hemisphere 51.7
2261 Male, age 18, unknown 51.7
2668 Female, age 75, unknown 50.0
1839 Male, age 51, unknown 49.8
1913 Female, age 42, unknown 49.5
1995 Male, age 72, unknown 47.5
2664 Male, age 75, both hemispheres 45.1
Ventral tegmental area
nTPM: 54.3
2410 Female, age 72, unknown 58.9
2218 Male, age 76, both hemispheres 56.1
1915 Female, age 42, unknown 56.0
1942 Male, age 51, unknown 52.3
2223 Female, age 72, unknown 52.0
2021 Male, age 53, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 43.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.4
Samples: 139

Max nTPM: 83.1
Min nTPM: 18.8
Std nTPM: 11.7
Median nTPM: 41.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 83.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 78.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 76.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 73.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 71.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 71.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 69.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 64.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 62.5
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 61.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 61.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.4
FF:10158-103A5 76 years, female 101.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 24.5
Min nTPM: 21.2
Sample A Female 23.2
Sample B Female 21.2
Sample C Male 24.5
Sample D Male 21.6
Periaqueductal gray
nTPM: 18.2
Samples: 3

Max nTPM: 22.3
Min nTPM: 15.9
Sample B Female 16.5
Sample C Male 22.3
Sample D Male 15.9
Substantia nigra
nTPM: 22.6
Samples: 4

Max nTPM: 32.8
Min nTPM: 13.2
Sample A Female 32.8
Sample B Female 19.7
Sample C Male 24.8
Sample D Male 13.2
Superior colliculi
nTPM: 23.9
Samples: 4

Max nTPM: 26.8
Min nTPM: 20.7
Sample A Female 25.2
Sample B Female 23.0
Sample C Male 26.8
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 151.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 151.6
Samples: 4

Max nTPM: 156.3
Min nTPM: 148.4
Sample A Male 153.3
Sample B Male 148.4
Sample C Female 148.4
Sample D Female 156.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
413778 Antisense, RP_040809_01_C10, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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