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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.9 nTPM
HPA:53.9 nTPM
GTEx:52.3 nTPM
FANTOM5:19.4 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:14.9 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 53.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2219 Male, age 76, both hemispheres 37.8
2411 Female, age 72, unknown 33.9
2666 Male, age 74, left hemisphere 33.1
1827 Male, age 72, unknown 32.9
1833 Male, age 53, unknown 32.5
2586 Male, age 75, left hemisphere 31.7
1870 Female, age 42, unknown 31.5
2828 Female, age 72, unknown 31.1
1830 Male, age 51, unknown 30.7
2019 Male, age 18, unknown 29.6
Dorsal raphe nucleus
nTPM: 39.7
2047 Male, age 72, unknown 49.1
2298 Female, age 72, unknown 43.4
2750 Male, age 76, both hemispheres 38.4
1828 Male, age 53, unknown 34.4
2016 Female, age 72, unknown 33.1
Inferior colliculus
nTPM: 34.9
2097 Female, age 72, unknown 37.4
1890 Male, age 53, unknown 35.7
2849 Male, age 72, unknown 33.3
1848 Female, age 42, unknown 33.2
Median raphe nucleus
nTPM: 53.9
2220 Male, age 76, midline 53.9
Pedunculopontine tegmental nucleus
nTPM: 35.7
1921 Female, age 85, both hemispheres 39.2
2334 Male, age 80, both hemispheres 35.7
2338 Male, age 61, both hemispheres 32.0
Periaquaductal grey, anterior
nTPM: 36.8
1947 Male, age 18, unknown 41.5
2502 Female, age 75, unknown 35.4
1795 Male, age 51, unknown 33.6
Periaquaductal grey, dorsal
nTPM: 32.8
1840 Male, age 53, unknown 35.2
2464 Female, age 72, unknown 33.1
2850 Male, age 76, both hemispheres 31.7
1831 Male, age 72, unknown 31.2
Periaquaductal grey, lateral
nTPM: 31.6
2053 Male, age 18, unknown 33.3
2140 Male, age 76, both hemispheres 31.0
2272 Male, age 74, both hemispheres 30.4
Pretectal area
nTPM: 33.2
1816 Male, age 51, unknown 36.3
1944 Female, age 72, unknown 36.1
2667 Female, age 75, unknown 34.6
2007 Male, age 72, unknown 33.5
1817 Female, age 42, unknown 33.4
1815 Male, age 53, unknown 33.2
2825 Male, age 18, unknown 33.0
2316 Male, age 76, right hemisphere 32.2
2224 Female, age 72, unknown 31.9
2273 Male, age 74, both hemispheres 30.5
2407 Male, age 75, both hemispheres 30.0
Red nucleus
nTPM: 30.4
2725 Female, age 75, unknown 32.0
1821 Female, age 72, unknown 31.9
2584 Male, age 75, left hemisphere 31.6
2503 Female, age 72, unknown 31.3
2588 Male, age 74, left hemisphere 30.9
1954 Female, age 42, unknown 30.4
2823 Male, age 76, right hemisphere 30.1
2769 Male, age 72, unknown 29.8
1865 Male, age 51, unknown 29.7
2227 Male, age 72, unknown 29.6
1904 Male, age 53, unknown 29.1
2785 Male, age 18, unknown 29.1
Substantia nigra
nTPM: 39.6
1916 Female, age 42, unknown 48.7
2241 Male, age 72, unknown 44.1
1851 Male, age 51, unknown 42.9
1941 Male, age 53, unknown 42.8
2409 Female, age 72, unknown 41.1
2665 Male, age 74, both hemispheres 39.8
2699 Male, age 18, unknown 36.9
1889 Female, age 72, unknown 34.6
2583 Male, age 75, right hemisphere 33.1
2590 Female, age 75, unknown 31.6
Superior colliculus
nTPM: 31.8
2668 Female, age 75, unknown 36.0
1796 Male, age 53, unknown 34.2
1895 Male, age 76, right hemisphere 33.1
2587 Male, age 74, left hemisphere 32.8
2087 Female, age 72, unknown 32.7
2261 Male, age 18, unknown 32.4
1839 Male, age 51, unknown 30.9
2664 Male, age 75, both hemispheres 30.0
1913 Female, age 42, unknown 28.9
1995 Male, age 72, unknown 27.3
Ventral tegmental area
nTPM: 38.6
2410 Female, age 72, unknown 43.0
2218 Male, age 76, both hemispheres 40.2
1915 Female, age 42, unknown 39.8
1942 Male, age 51, unknown 39.1
2223 Female, age 72, unknown 35.0
2021 Male, age 53, unknown 34.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.3
Samples: 139

Max nTPM: 160.0
Min nTPM: 17.7
Std nTPM: 26.7
Median nTPM: 46.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 160.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 140.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 140.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 133.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 110.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 109.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 109.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 108.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 108.1
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 103.8
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 95.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.4
FF:10158-103A5 76 years, female 19.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 9.7
Min nTPM: 5.4
Sample A Female 8.4
Sample B Female 9.7
Sample C Male 5.4
Sample D Male 9.3
Periaqueductal gray
nTPM: 8.2
Samples: 3

Max nTPM: 10.3
Min nTPM: 6.4
Sample B Female 7.8
Sample C Male 10.3
Sample D Male 6.4
Substantia nigra
nTPM: 7.1
Samples: 4

Max nTPM: 12.3
Min nTPM: 3.3
Sample A Female 12.3
Sample B Female 5.1
Sample C Male 7.7
Sample D Male 3.3
Superior colliculi
nTPM: 8.3
Samples: 4

Max nTPM: 14.8
Min nTPM: 4.1
Sample A Female 14.8
Sample B Female 7.6
Sample C Male 4.1
Sample D Male 6.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 14.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.9
Samples: 4

Max nTPM: 16.4
Min nTPM: 13.8
Sample A Male 16.4
Sample B Male 15.4
Sample C Female 13.8
Sample D Female 14.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71764482 Antisense, RP_050926_01_C05, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
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