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CDO1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.2 nTPM
HPA:26.2 nTPM
GTEx:20.5 nTPM
FANTOM5:19.2 Scaled Tags Per Million
Pig:7.6 nTPM
Mouse:28.5 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 26.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.8
2411 Female, age 72, unknown 25.7
1870 Female, age 42, unknown 24.6
2019 Male, age 18, unknown 24.3
1833 Male, age 53, unknown 23.2
1827 Male, age 72, unknown 22.9
2219 Male, age 76, both hemispheres 22.8
1830 Male, age 51, unknown 21.9
2586 Male, age 75, left hemisphere 21.6
2828 Female, age 72, unknown 21.1
2666 Male, age 74, left hemisphere 19.7
Dorsal raphe nucleus
nTPM: 26.2
2298 Female, age 72, unknown 29.0
2016 Female, age 72, unknown 27.0
1828 Male, age 53, unknown 26.0
2047 Male, age 72, unknown 25.9
2750 Male, age 76, both hemispheres 23.2
Inferior colliculus
nTPM: 24.9
2097 Female, age 72, unknown 27.4
1848 Female, age 42, unknown 24.7
2849 Male, age 72, unknown 24.0
1890 Male, age 53, unknown 23.7
Median raphe nucleus
nTPM: 25.2
2220 Male, age 76, midline 25.2
Pedunculopontine tegmental nucleus
nTPM: 22.9
1921 Female, age 85, both hemispheres 24.3
2334 Male, age 80, both hemispheres 23.1
2338 Male, age 61, both hemispheres 21.4
Periaquaductal grey, anterior
nTPM: 23.6
2502 Female, age 75, unknown 24.5
1795 Male, age 51, unknown 23.5
1947 Male, age 18, unknown 22.7
Periaquaductal grey, dorsal
nTPM: 25.3
1840 Male, age 53, unknown 26.9
2850 Male, age 76, both hemispheres 25.6
1831 Male, age 72, unknown 24.6
2464 Female, age 72, unknown 24.3
Periaquaductal grey, lateral
nTPM: 25.7
2272 Male, age 74, both hemispheres 29.7
2140 Male, age 76, both hemispheres 24.0
2053 Male, age 18, unknown 23.5
Pretectal area
nTPM: 25.6
2273 Male, age 74, both hemispheres 38.5
2224 Female, age 72, unknown 27.8
1944 Female, age 72, unknown 25.2
2667 Female, age 75, unknown 25.2
2825 Male, age 18, unknown 24.7
1816 Male, age 51, unknown 24.6
2407 Male, age 75, both hemispheres 24.0
1817 Female, age 42, unknown 23.8
2007 Male, age 72, unknown 23.5
1815 Male, age 53, unknown 23.2
2316 Male, age 76, right hemisphere 21.7
Red nucleus
nTPM: 22.7
1821 Female, age 72, unknown 24.5
2725 Female, age 75, unknown 24.5
1954 Female, age 42, unknown 23.8
1904 Male, age 53, unknown 23.2
2785 Male, age 18, unknown 23.2
2769 Male, age 72, unknown 23.0
2227 Male, age 72, unknown 22.9
1865 Male, age 51, unknown 22.3
2823 Male, age 76, right hemisphere 22.2
2503 Female, age 72, unknown 21.9
2584 Male, age 75, left hemisphere 20.6
2588 Male, age 74, left hemisphere 20.0
Substantia nigra
nTPM: 24.0
2241 Male, age 72, unknown 26.3
1916 Female, age 42, unknown 25.8
1889 Female, age 72, unknown 25.7
1851 Male, age 51, unknown 25.5
2699 Male, age 18, unknown 24.8
2409 Female, age 72, unknown 24.3
1941 Male, age 53, unknown 23.9
2590 Female, age 75, unknown 22.3
2583 Male, age 75, right hemisphere 21.1
2665 Male, age 74, both hemispheres 20.3
Superior colliculus
nTPM: 23.6
2587 Male, age 74, left hemisphere 26.0
2664 Male, age 75, both hemispheres 24.6
1796 Male, age 53, unknown 24.3
2087 Female, age 72, unknown 23.9
1895 Male, age 76, right hemisphere 23.8
1839 Male, age 51, unknown 23.5
1995 Male, age 72, unknown 23.2
2261 Male, age 18, unknown 23.1
2668 Female, age 75, unknown 22.2
1913 Female, age 42, unknown 21.4
Ventral tegmental area
nTPM: 24.9
2410 Female, age 72, unknown 26.3
1915 Female, age 42, unknown 25.5
1942 Male, age 51, unknown 25.0
2223 Female, age 72, unknown 24.4
2021 Male, age 53, unknown 24.3
2218 Male, age 76, both hemispheres 24.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 20.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.5
Samples: 139

Max nTPM: 41.7
Min nTPM: 5.1
Std nTPM: 5.8
Median nTPM: 20.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 41.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 36.1
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 35.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 35.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 33.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 32.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 30.5
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 29.1
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 28.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 28.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.2
FF:10158-103A5 76 years, female 19.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.6
Pig sample Sample description nTPM
Midbrain
nTPM: 5.8
Samples: 4

Max nTPM: 6.7
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 5.4
Sample C Male 6.6
Sample D Male 6.7
Periaqueductal gray
nTPM: 7.5
Samples: 3

Max nTPM: 8.1
Min nTPM: 6.7
Sample B Female 6.7
Sample C Male 8.1
Sample D Male 7.8
Substantia nigra
nTPM: 6.8
Samples: 4

Max nTPM: 8.7
Min nTPM: 4.3
Sample A Female 8.7
Sample B Female 6.2
Sample C Male 7.8
Sample D Male 4.3
Superior colliculi
nTPM: 6.5
Samples: 4

Max nTPM: 7.1
Min nTPM: 5.6
Sample A Female 6.8
Sample B Female 5.6
Sample C Male 7.1
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 30.8
Min nTPM: 26.0
Sample A Male 26.0
Sample B Male 29.2
Sample C Female 30.8
Sample D Female 27.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
68302184 Antisense, RP_041130_02_D02, Mouse strain C57BL/6J (56 days, male) 1.4
74583197 Antisense, RP_051214_01_B04, Mouse strain C57BL/6J (56 days, male) 0.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.