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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:606.1 nTPM
HPA:606.1 nTPM
GTEx:1064.4 nTPM
FANTOM5:1021.9 Scaled Tags Per Million
Pig:405.7 nTPM
Mouse:606.1 nTPM
Allen mouse:25.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA065539Antibody HPA068768Antibody CAB008363Antibody CAB069921
Glial cells MediumMediumMediumMedium
Neuronal cells MediumMediumHighHigh









HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 606.1
Sample id Sample description nTPM
Hippocampus
nTPM: 606.1
2529 Female, age 94, left hemisphere 715.5
2148 Female, age 91, left hemisphere 657.7
1855 Male, age 76, left hemisphere 598.9
1898 Male, age 80, left hemisphere 585.8
1911 Female, age 85, right hemisphere 542.3
2621 Female, age 67, right hemisphere 536.5
Dentate gyrus
nTPM: 510.5
2528 Male, age 74, both hemispheres 598.7
2246 Female, age 85, both hemispheres 534.8
2530 Female, age 94, left hemisphere 518.1
2010 Male, age 76, both hemispheres 512.0
1927 Female, age 91, both hemispheres 452.1
2531 Female, age 67, both hemispheres 447.5
Entorhinal gyrus
nTPM: 577.7
2117 Female, age 91, right hemisphere 973.0
1787 Male, age 76, left hemisphere 578.8
1938 Female, age 85, left hemisphere 543.4
2764 Male, age 80, right hemisphere 507.1
2613 Female, age 94, left hemisphere 452.2
2686 Male, age 75, right hemisphere 411.5
Hippocampus, CA1
nTPM: 548.9
2527 Male, age 74, both hemispheres 794.0
2082 Female, age 91, right hemisphere 537.1
2045 Male, age 76, both hemispheres 513.6
1873 Female, age 85, both hemispheres 476.7
2749 Male, age 80, left hemisphere 423.2
Hippocampus, CA2
nTPM: 544.1
1940 Female, age 85, left hemisphere 663.1
2113 Female, age 91, right hemisphere 641.9
2249 Male, age 74, both hemispheres 577.7
2437 Female, age 94, left hemisphere 491.5
1963 Male, age 80, left hemisphere 486.4
1892 Male, age 76, both hemispheres 404.1
Hippocampus, CA3
nTPM: 502.0
2436 Male, age 74, both hemispheres 572.0
2861 Female, age 67, both hemispheres 552.1
1867 Male, age 76, both hemispheres 501.1
1891 Female, age 85, both hemispheres 496.1
2620 Female, age 94, left hemisphere 480.7
2137 Male, age 80, left hemisphere 409.8
Parahippocampal cortex
nTPM: 539.5
2250 Female, age 67, right hemisphere 660.7
2018 Male, age 76, both hemispheres 617.8
2245 Female, age 91, both hemispheres 583.2
2692 Male, age 74, both hemispheres 580.5
1933 Female, age 85, both hemispheres 566.4
1990 Female, age 91, right hemisphere 545.1
2622 Female, age 67, right hemisphere 537.1
2532 Female, age 72, left hemisphere 479.6
1850 Male, age 80, both hemispheres 439.6
2693 Female, age 94, both hemispheres 384.9
Perirhinal gyrus
nTPM: 474.3
1847 Female, age 91, left hemisphere 578.7
1794 Male, age 80, right hemisphere 510.4
2521 Female, age 94, right hemisphere 458.8
2848 Male, age 76, right hemisphere 415.1
1841 Female, age 85, right hemisphere 408.2
Subiculum
nTPM: 591.8
2729 Female, age 91, right hemisphere 743.9
2619 Male, age 74, both hemispheres 677.8
2042 Male, age 76, both hemispheres 573.9
2438 Female, age 94, left hemisphere 534.0
1901 Male, age 80, both hemispheres 519.3
1977 Female, age 85, both hemispheres 501.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 1064.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 1064.4
Samples: 197

Max nTPM: 3294.9
Min nTPM: 161.0
Std nTPM: 584.9
Median nTPM: 907.6
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 3294.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 3152.0
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 2721.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 2618.7
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 2424.8
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 2422.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 2418.1
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 2416.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 2350.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 2321.3
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 2320.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 1021.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 1021.9
FF:10153-102I9 76 years, female 1025.8
FF:10169-103B7 60 years, female 1018.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 405.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 314.7
Samples: 4

Max nTPM: 389.8
Min nTPM: 246.1
Sample A Female 389.8
Sample B Female 286.6
Sample C Male 336.2
Sample D Male 246.1
Entorhinal cortex
nTPM: 330.7
Samples: 4

Max nTPM: 409.8
Min nTPM: 270.2
Sample A Female 288.8
Sample B Female 354.1
Sample C Male 409.8
Sample D Male 270.2
Subiculum
nTPM: 405.7
Samples: 4

Max nTPM: 549.3
Min nTPM: 281.3
Sample A Female 549.3
Sample B Female 408.1
Sample C Male 384.1
Sample D Male 281.3
Ventral hippocampus
nTPM: 396.6
Samples: 4

Max nTPM: 510.1
Min nTPM: 295.4
Sample A Female 390.3
Sample B Female 390.5
Sample C Male 510.1
Sample D Male 295.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 606.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 606.1
Samples: 4

Max nTPM: 635.2
Min nTPM: 574.8
Sample A Male 635.2
Sample B Male 581.7
Sample C Female 632.6
Sample D Female 574.8
Hippocampal formation
nTPM: 602.2
Samples: 4

Max nTPM: 638.0
Min nTPM: 533.8
Sample A Male 638.0
Sample B Male 606.1
Sample C Female 533.8
Sample D Female 630.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 25.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 25.2
67936406 Antisense, RP_040604_02_C10, Mouse strain C57BL/6J (56 days, male) 30.0
77620395 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 20.5
79490110 Antisense, RP_070205_01_F04, Mouse strain C57BL/6J (56 days, male) 17.6

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.