ABOUTMENU
HELP
NEWS
KIF1A
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:55.6 nTPM
HPA:55.6 nTPM
GTEx:103.6 nTPM
FANTOM5:826.3 Scaled Tags Per Million
Pig:179.4 nTPM
Mouse:266.6 nTPM
Allen mouse:9.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 55.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.1
1781 Male, age 74, unknown 0.9
1854 Male, age 80, left hemisphere 0.0
1857 Female, age 85, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 44.6
2568 Male, age 61, both hemispheres 83.0
2198 Male, age 80, both hemispheres 73.4
2645 Female, age 72, unknown 58.3
2491 Male, age 75, both hemispheres 53.2
2284 Female, age 91, both hemispheres 51.5
2196 Female, age 79, unknown 41.9
1956 Male, age 74, unknown 40.6
2292 Female, age 85, both hemispheres 0.0
2392 Female, age 94, both hemispheres 0.0
Globus pallidus, externus
nTPM: 12.5
2646 Male, age 61, right hemisphere 36.3
2772 Female, age 79, unknown 26.2
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
Globus pallidus, internus
nTPM: 8.2
2287 Male, age 75, right hemisphere 56.3
1818 Male, age 74, unknown 1.2
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 0.0
1783 Male, age 74, unknown 0.0
1806 Female, age 85, left hemisphere 0.0
1856 Female, age 91, right hemisphere 0.0
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 7.9
2569 Male, age 61, both hemispheres 31.7
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 48.8
2195 Female, age 85, both hemispheres 95.3
2775 Male, age 80, right hemisphere 74.6
2029 Male, age 61, right hemisphere 43.4
1812 Female, age 91, both hemispheres 30.8
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 55.6
1998 Female, age 91, both hemispheres 75.7
2487 Female, age 94, left hemisphere 72.6
1846 Male, age 80, right hemisphere 39.1
2856 Male, age 75, right hemisphere 34.8
Putamen
nTPM: 1.4
2647 Male, age 75, left hemisphere 10.1
1829 Male, age 74, unknown 0.0
1838 Male, age 80, right hemisphere 0.0
1937 Female, age 91, right hemisphere 0.0
2466 Female, age 79, unknown 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 28.5
1960 Male, age 74, unknown 71.5
2629 Female, age 94, right hemisphere 58.0
2031 Female, age 72, unknown 47.2
2059 Female, age 85, both hemispheres 15.5
2009 Female, age 91, both hemispheres 7.7
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 103.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 93.7
Samples: 246

Max nTPM: 181.8
Min nTPM: 29.5
Std nTPM: 28.4
Median nTPM: 93.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 181.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 175.3
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 159.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 152.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 151.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 151.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 151.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 150.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 150.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 147.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 144.3
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 103.6
Samples: 246

Max nTPM: 254.8
Min nTPM: 28.2
Std nTPM: 37.7
Median nTPM: 99.7
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 254.8
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 215.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 207.7
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 204.7
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 202.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 176.1
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 174.0
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 170.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 170.8
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 170.3
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 170.0
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 98.1
Samples: 205

Max nTPM: 197.6
Min nTPM: 40.8
Std nTPM: 31.4
Median nTPM: 94.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 197.6
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 180.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 179.4
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 174.9
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 171.7
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 169.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 164.5
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 153.0
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 152.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 151.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 149.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 826.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 652.8
FF:10164-103B2 76 years, female 652.8
Globus pallidus
Scaled Tags Per Million: 826.3
FF:10175-103C4 60 years, female 983.5
FF:10161-103A8 76 years, female 669.2
Nucleus accumbens
Scaled Tags Per Million: 815.3
FF:10037-101F1 23-56 years, mixed 815.3
Putamen
Scaled Tags Per Million: 798.3
FF:10176-103C5 60 years, female 798.3

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 179.4
Pig sample Sample description nTPM
Caudate
nTPM: 152.4
Samples: 4

Max nTPM: 173.6
Min nTPM: 125.4
Sample A Female 125.4
Sample B Female 158.4
Sample C Male 173.6
Sample D Male 152.1
Putamen
nTPM: 175.9
Samples: 4

Max nTPM: 217.3
Min nTPM: 138.1
Sample A Female 163.2
Sample B Female 138.1
Sample C Male 185.0
Sample D Male 217.3
Septum
nTPM: 147.0
Samples: 4

Max nTPM: 184.5
Min nTPM: 124.9
Sample A Female 140.7
Sample B Female 137.9
Sample C Male 184.5
Sample D Male 124.9
Ventral pallidum
nTPM: 179.4
Samples: 4

Max nTPM: 264.8
Min nTPM: 134.6
Sample A Female 134.6
Sample B Female 143.5
Sample C Male 264.8
Sample D Male 174.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 266.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 242.2
Samples: 4

Max nTPM: 253.0
Min nTPM: 230.5
Sample A Male 230.5
Sample B Male 243.9
Sample C Female 241.5
Sample D Female 253.0
Septum
nTPM: 263.7
Samples: 4

Max nTPM: 294.6
Min nTPM: 235.9
Sample A Male 294.6
Sample B Male 246.8
Sample C Female 235.9
Sample D Female 277.6
Ventral forebrain
nTPM: 266.7
Samples: 4

Max nTPM: 294.7
Min nTPM: 238.0
Sample A Male 258.5
Sample B Male 294.7
Sample C Female 238.0
Sample D Female 275.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.5
69735759 Antisense, RP_050503_03_E02, Mouse strain C57BL/6J (56 days, male) 13.2
74513872 Antisense, RP_060208_01_E12, Mouse strain C57BL/6J (56 days, male) 3.8
Pallidum
Expression energy: 9.6
69735759 Antisense, RP_050503_03_E02, Mouse strain C57BL/6J (56 days, male) 14.6
74513872 Antisense, RP_060208_01_E12, Mouse strain C57BL/6J (56 days, male) 4.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.