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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.4 nTPM
HPA:42.4 nTPM
GTEx:68.9 nTPM
FANTOM5:117.0 Scaled Tags Per Million
Pig:76.1 nTPM
Mouse:44.3 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.9
2019 Male, age 18, unknown 44.5
1870 Female, age 42, unknown 37.5
1830 Male, age 51, unknown 37.2
1833 Male, age 53, unknown 33.4
2411 Female, age 72, unknown 30.6
2828 Female, age 72, unknown 26.9
2219 Male, age 76, both hemispheres 20.1
1827 Male, age 72, unknown 19.7
2666 Male, age 74, left hemisphere 19.6
2586 Male, age 75, left hemisphere 19.3
Dorsal raphe nucleus
nTPM: 24.0
2750 Male, age 76, both hemispheres 36.3
1828 Male, age 53, unknown 23.4
2016 Female, age 72, unknown 22.2
2298 Female, age 72, unknown 21.1
2047 Male, age 72, unknown 16.7
Inferior colliculus
nTPM: 20.4
1890 Male, age 53, unknown 24.9
1848 Female, age 42, unknown 19.6
2849 Male, age 72, unknown 18.8
2097 Female, age 72, unknown 18.4
Median raphe nucleus
nTPM: 17.5
2220 Male, age 76, midline 17.5
Pedunculopontine tegmental nucleus
nTPM: 26.8
2334 Male, age 80, both hemispheres 30.2
2338 Male, age 61, both hemispheres 30.0
1921 Female, age 85, both hemispheres 20.2
Periaquaductal grey, anterior
nTPM: 24.9
2502 Female, age 75, unknown 34.5
1795 Male, age 51, unknown 22.7
1947 Male, age 18, unknown 17.3
Periaquaductal grey, dorsal
nTPM: 19.5
2850 Male, age 76, both hemispheres 36.0
2464 Female, age 72, unknown 19.4
1831 Male, age 72, unknown 15.4
1840 Male, age 53, unknown 7.0
Periaquaductal grey, lateral
nTPM: 30.2
2272 Male, age 74, both hemispheres 40.8
2140 Male, age 76, both hemispheres 32.1
2053 Male, age 18, unknown 17.7
Pretectal area
nTPM: 21.3
2273 Male, age 74, both hemispheres 29.9
2667 Female, age 75, unknown 28.1
1815 Male, age 53, unknown 24.8
2007 Male, age 72, unknown 24.0
1817 Female, age 42, unknown 23.2
2316 Male, age 76, right hemisphere 22.9
2825 Male, age 18, unknown 19.1
2224 Female, age 72, unknown 18.8
2407 Male, age 75, both hemispheres 17.8
1944 Female, age 72, unknown 14.3
1816 Male, age 51, unknown 11.2
Red nucleus
nTPM: 42.4
2769 Male, age 72, unknown 53.8
2785 Male, age 18, unknown 53.2
1865 Male, age 51, unknown 52.4
2227 Male, age 72, unknown 51.1
1904 Male, age 53, unknown 49.4
1821 Female, age 72, unknown 44.8
1954 Female, age 42, unknown 39.5
2588 Male, age 74, left hemisphere 38.5
2503 Female, age 72, unknown 38.2
2823 Male, age 76, right hemisphere 35.1
2584 Male, age 75, left hemisphere 28.3
2725 Female, age 75, unknown 25.1
Substantia nigra
nTPM: 23.0
1851 Male, age 51, unknown 29.3
2699 Male, age 18, unknown 27.9
1941 Male, age 53, unknown 27.2
2590 Female, age 75, unknown 23.9
1889 Female, age 72, unknown 23.8
1916 Female, age 42, unknown 22.6
2409 Female, age 72, unknown 21.4
2583 Male, age 75, right hemisphere 20.5
2665 Male, age 74, both hemispheres 18.5
2241 Male, age 72, unknown 14.6
Superior colliculus
nTPM: 24.0
1913 Female, age 42, unknown 40.4
1995 Male, age 72, unknown 38.3
2587 Male, age 74, left hemisphere 30.2
1839 Male, age 51, unknown 22.9
1895 Male, age 76, right hemisphere 22.4
1796 Male, age 53, unknown 21.0
2261 Male, age 18, unknown 19.5
2668 Female, age 75, unknown 19.3
2087 Female, age 72, unknown 16.9
2664 Male, age 75, both hemispheres 9.4
Ventral tegmental area
nTPM: 27.5
2223 Female, age 72, unknown 45.2
2410 Female, age 72, unknown 30.8
2218 Male, age 76, both hemispheres 24.3
1915 Female, age 42, unknown 22.9
2021 Male, age 53, unknown 21.8
1942 Male, age 51, unknown 20.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 68.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.9
Samples: 139

Max nTPM: 229.6
Min nTPM: 28.9
Std nTPM: 26.2
Median nTPM: 64.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 229.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 220.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 144.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 127.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 114.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 113.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 110.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 103.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 102.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 97.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 95.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.0
FF:10158-103A5 76 years, female 117.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 76.1
Pig sample Sample description nTPM
Midbrain
nTPM: 64.9
Samples: 4

Max nTPM: 97.3
Min nTPM: 52.0
Sample A Female 97.3
Sample B Female 55.2
Sample C Male 55.0
Sample D Male 52.0
Periaqueductal gray
nTPM: 47.8
Samples: 3

Max nTPM: 50.4
Min nTPM: 46.4
Sample B Female 50.4
Sample C Male 46.4
Sample D Male 46.6
Substantia nigra
nTPM: 68.6
Samples: 4

Max nTPM: 80.0
Min nTPM: 55.1
Sample A Female 60.7
Sample B Female 80.0
Sample C Male 55.1
Sample D Male 78.4
Superior colliculi
nTPM: 76.0
Samples: 4

Max nTPM: 94.7
Min nTPM: 62.1
Sample A Female 79.5
Sample B Female 94.7
Sample C Male 62.1
Sample D Male 67.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 44.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 44.3
Samples: 4

Max nTPM: 46.8
Min nTPM: 40.8
Sample A Male 40.8
Sample B Male 43.4
Sample C Female 46.8
Sample D Female 46.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68301533 Antisense, RP_041130_01_D07, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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