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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.8 nTPM
HPA:15.8 nTPM
GTEx:22.9 nTPM
FANTOM5:184.0 Scaled Tags Per Million
Mouse:50.3 nTPM
Allen mouse:8.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 15.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.3
1781 Male, age 74, unknown 5.5
1857 Female, age 85, left hemisphere 5.1
1854 Male, age 80, left hemisphere 0.0
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
2846 Female, age 79, unknown 0.0
Claustrum
nTPM: 11.9
2568 Male, age 61, both hemispheres 27.4
2284 Female, age 91, both hemispheres 18.5
2645 Female, age 72, unknown 18.5
2491 Male, age 75, both hemispheres 17.4
1956 Male, age 74, unknown 12.4
2198 Male, age 80, both hemispheres 11.3
2392 Female, age 94, both hemispheres 1.1
2196 Female, age 79, unknown 0.4
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 2.7
1783 Male, age 74, unknown 11.6
1856 Female, age 91, right hemisphere 6.7
2824 Male, age 61, right hemisphere 2.2
1806 Female, age 85, left hemisphere 1.3
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 12.1
2029 Male, age 61, right hemisphere 21.5
2195 Female, age 85, both hemispheres 15.4
1812 Female, age 91, both hemispheres 12.6
2775 Male, age 80, right hemisphere 11.3
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 15.8
1998 Female, age 91, both hemispheres 24.7
2487 Female, age 94, left hemisphere 17.9
2856 Male, age 75, right hemisphere 12.6
1846 Male, age 80, right hemisphere 8.1
Putamen
nTPM: 1.5
1838 Male, age 80, right hemisphere 4.0
1829 Male, age 74, unknown 3.7
2466 Female, age 79, unknown 2.9
1937 Female, age 91, right hemisphere 0.0
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 5.9
1960 Male, age 74, unknown 17.7
2629 Female, age 94, right hemisphere 9.3
2031 Female, age 72, unknown 7.7
2009 Female, age 91, both hemispheres 6.5
2059 Female, age 85, both hemispheres 0.0
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 22.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 18.6
Samples: 246

Max nTPM: 62.9
Min nTPM: 1.8
Std nTPM: 11.3
Median nTPM: 17.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 62.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 49.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 44.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 44.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 43.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 42.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 42.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 42.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 41.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 40.3
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 39.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.9
Samples: 246

Max nTPM: 59.6
Min nTPM: 1.6
Std nTPM: 11.9
Median nTPM: 23.5
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 59.6
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 52.0
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 46.3
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 46.0
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 45.7
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 44.3
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 43.9
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 43.5
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 43.3
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 43.3
GTEX-14JIY-0011-R6b-SM-68714 60-69 years, male 43.0
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Brain - Putamen (basal ganglia)
Average nTPM: 16.1
Samples: 205

Max nTPM: 41.0
Min nTPM: 0.9
Std nTPM: 9.7
Median nTPM: 14.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 41.0
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 40.9
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 40.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 37.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 35.4
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 34.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 34.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 34.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 34.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 33.9
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 33.4
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 184.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 98.0
FF:10164-103B2 76 years, female 98.0
Globus pallidus
Scaled Tags Per Million: 57.4
FF:10175-103C4 60 years, female 99.4
FF:10161-103A8 76 years, female 15.3
Nucleus accumbens
Scaled Tags Per Million: 184.0
FF:10037-101F1 23-56 years, mixed 184.0
Putamen
Scaled Tags Per Million: 148.3
FF:10176-103C5 60 years, female 148.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.3
Samples: 4

Max nTPM: 52.2
Min nTPM: 47.9
Sample A Male 49.7
Sample B Male 52.2
Sample C Female 47.9
Sample D Female 51.4
Septum
nTPM: 29.9
Samples: 4

Max nTPM: 33.9
Min nTPM: 28.1
Sample A Male 33.9
Sample B Male 28.1
Sample C Female 28.4
Sample D Female 29.1
Ventral forebrain
nTPM: 48.4
Samples: 4

Max nTPM: 56.7
Min nTPM: 38.2
Sample A Male 50.2
Sample B Male 48.5
Sample C Female 38.2
Sample D Female 56.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 8.7
70785218 Antisense, RP_050706_02_A06, Mouse strain C57BL/6J (56 days, male) 8.7
Pallidum
Expression energy: 5.4
70785218 Antisense, RP_050706_02_A06, Mouse strain C57BL/6J (56 days, male) 5.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.