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SSBP4
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.1 nTPM
HPA:87.1 nTPM
GTEx:162.7 nTPM
FANTOM5:74.4 Scaled Tags Per Million
Pig:51.5 nTPM
Mouse:50.6 nTPM
Allen mouse:11.7 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 87.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 86.0
2290 Female, age 72, unknown 119.8
2846 Female, age 79, unknown 106.9
1857 Female, age 85, left hemisphere 101.4
1854 Male, age 80, left hemisphere 84.5
2289 Male, age 61, right hemisphere 84.2
1781 Male, age 74, unknown 78.7
2288 Male, age 75, left hemisphere 68.7
2481 Female, age 94, left hemisphere 43.8
Claustrum
nTPM: 57.7
2645 Female, age 72, unknown 90.1
2568 Male, age 61, both hemispheres 66.1
2196 Female, age 79, unknown 65.1
2284 Female, age 91, both hemispheres 63.8
2198 Male, age 80, both hemispheres 55.4
2491 Male, age 75, both hemispheres 51.7
1956 Male, age 74, unknown 47.7
2292 Female, age 85, both hemispheres 43.1
2392 Female, age 94, both hemispheres 36.7
Globus pallidus, externus
nTPM: 28.1
2646 Male, age 61, right hemisphere 34.9
2567 Female, age 72, unknown 30.6
2395 Male, age 75, both hemispheres 29.3
2772 Female, age 79, unknown 25.3
1996 Male, age 80, right hemisphere 20.6
Globus pallidus, internus
nTPM: 23.0
2483 Female, age 94, right hemisphere 38.5
2566 Female, age 72, unknown 22.4
2287 Male, age 75, right hemisphere 21.0
2111 Female, age 85, right hemisphere 20.7
1818 Male, age 74, unknown 20.6
2037 Male, age 80, right hemisphere 20.1
2778 Female, age 91, both hemispheres 17.5
Nucleus accumbens
nTPM: 79.6
1783 Male, age 74, unknown 120.4
1856 Female, age 91, right hemisphere 102.0
1806 Female, age 85, left hemisphere 101.5
2824 Male, age 61, right hemisphere 81.7
2698 Female, age 72, unknown 74.2
2286 Male, age 75, left hemisphere 63.5
2732 Male, age 80, right hemisphere 62.4
2391 Female, age 94, left hemisphere 31.0
Nucleus basalis of Meynert
nTPM: 64.1
2484 Female, age 94, left hemisphere 79.1
2393 Male, age 80, right hemisphere 68.6
2821 Male, age 75, both hemispheres 56.6
2569 Male, age 61, both hemispheres 52.2
Nucleus of the diagonal band
nTPM: 60.0
2195 Female, age 85, both hemispheres 69.0
1979 Male, age 74, unknown 62.3
2029 Male, age 61, right hemisphere 58.5
2775 Male, age 80, right hemisphere 57.4
1812 Female, age 91, both hemispheres 52.6
Olfactory tubercle
nTPM: 55.5
2487 Female, age 94, left hemisphere 62.4
1998 Female, age 91, both hemispheres 56.7
2856 Male, age 75, right hemisphere 54.2
1846 Male, age 80, right hemisphere 48.6
Putamen
nTPM: 87.1
2466 Female, age 79, unknown 110.5
2489 Female, age 72, unknown 103.2
1838 Male, age 80, right hemisphere 91.2
1829 Male, age 74, unknown 88.9
2647 Male, age 75, left hemisphere 84.5
1937 Female, age 91, right hemisphere 79.2
2482 Female, age 94, left hemisphere 52.0
Septal nuclei
nTPM: 55.9
2059 Female, age 85, both hemispheres 70.0
1960 Male, age 74, unknown 69.0
2009 Female, age 91, both hemispheres 61.2
2031 Female, age 72, unknown 56.5
2629 Female, age 94, right hemisphere 48.4
2199 Male, age 80, right hemisphere 43.2
2394 Male, age 61, left hemisphere 42.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 162.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 147.8
Samples: 246

Max nTPM: 290.8
Min nTPM: 15.1
Std nTPM: 42.8
Median nTPM: 147.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 290.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 271.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 266.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 257.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 249.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 244.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 243.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 238.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 232.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 232.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 227.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 162.7
Samples: 246

Max nTPM: 322.0
Min nTPM: 23.2
Std nTPM: 55.8
Median nTPM: 159.2
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 322.0
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 286.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 281.6
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 281.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 269.7
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 266.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 263.3
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 261.5
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 260.5
GTEX-12WSF-0011-R6b-SM-5HL8W 70-79 years, male 260.2
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 255.3
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Brain - Putamen (basal ganglia)
Average nTPM: 148.9
Samples: 205

Max nTPM: 283.7
Min nTPM: 34.5
Std nTPM: 49.7
Median nTPM: 151.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 283.7
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 261.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 254.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 253.1
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 252.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 249.5
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 246.6
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 246.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 242.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 229.2
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 229.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 74.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 71.7
FF:10164-103B2 76 years, female 71.7
Globus pallidus
Scaled Tags Per Million: 23.4
FF:10175-103C4 60 years, female 23.6
FF:10161-103A8 76 years, female 23.1
Nucleus accumbens
Scaled Tags Per Million: 41.9
FF:10037-101F1 23-56 years, mixed 41.9
Putamen
Scaled Tags Per Million: 74.4
FF:10176-103C5 60 years, female 74.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 51.5
Pig sample Sample description nTPM
Caudate
nTPM: 51.6
Samples: 4

Max nTPM: 62.0
Min nTPM: 39.1
Sample A Female 39.1
Sample B Female 55.4
Sample C Male 62.0
Sample D Male 49.7
Putamen
nTPM: 44.2
Samples: 4

Max nTPM: 55.1
Min nTPM: 25.1
Sample A Female 25.1
Sample B Female 43.5
Sample C Male 55.1
Sample D Male 52.9
Septum
nTPM: 33.3
Samples: 4

Max nTPM: 40.8
Min nTPM: 24.2
Sample A Female 40.8
Sample B Female 36.8
Sample C Male 24.2
Sample D Male 31.5
Ventral pallidum
nTPM: 35.3
Samples: 4

Max nTPM: 38.5
Min nTPM: 27.3
Sample A Female 38.5
Sample B Female 37.5
Sample C Male 27.3
Sample D Male 37.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 50.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 50.6
Samples: 4

Max nTPM: 75.5
Min nTPM: 31.9
Sample A Male 50.8
Sample B Male 75.5
Sample C Female 31.9
Sample D Female 44.3
Septum
nTPM: 44.9
Samples: 4

Max nTPM: 48.9
Min nTPM: 37.2
Sample A Male 48.9
Sample B Male 48.9
Sample C Female 44.6
Sample D Female 37.2
Ventral forebrain
nTPM: 46.7
Samples: 4

Max nTPM: 56.8
Min nTPM: 36.8
Sample A Male 56.8
Sample B Male 38.0
Sample C Female 55.0
Sample D Female 36.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 11.7
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 11.7
73817987 Antisense, RP_051214_01_B01, Mouse strain C57BL/6J (56 days, male) 12.6
68076537 Antisense, RP_040923_02_E08, Mouse strain C57BL/6J (56 days, male) 10.7
Pallidum
Expression energy: 9.6
73817987 Antisense, RP_051214_01_B01, Mouse strain C57BL/6J (56 days, male) 10.0
68076537 Antisense, RP_040923_02_E08, Mouse strain C57BL/6J (56 days, male) 9.2

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.