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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA004946
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM: 2855.0
Min nTPM: 275.8
Std nTPM: 580.1
Median nTPM:
246_1
77 years, male
2855.0
377_1
82 years, female
2637.9
376_1
75 years, female
2428.2
319_1
81 years, male
2407.9
6_1
73 years, female
2404.1
503_1
68 years, male
2392.4
163_1
78 years, male
2387.2
468_1
89 years, male
2353.9
425_1
59 years, female
2256.6
243_1
75 years, male
2240.9
526_1
61 years, male
2207.7
394_1
75 years, female
2194.4
335_1
73 years, female
2187.9
189_1
76 years, male
2167.0
266_1
85 years, male
2145.7
115_1
83 years, male
2141.6
265_1
87 years, male
2088.9
177_1
74 years, male
2057.0
9_1
66 years, female
2053.7
126_1
63 years, male
2047.6
229_1
69 years, female
2017.6
172_1
72 years, female
2013.7
389_1
86 years, female
1992.8
480_1
63 years, male
1987.8
349_1
83 years, male
1949.4
217_1
76 years, male
1944.8
286_1
68 years, female
1921.3
355_1
70 years, female
1917.0
153_1
70 years, female
1903.6
405_1
91 years, male
1902.6
251_1
78 years, male
1900.0
352_1
62 years, male
1879.4
386_1
76 years, male
1831.2
406_1
79 years, male
1823.1
414_1
84 years, female
1810.6
356_1
87 years, female
1806.0
354_1
81 years, female
1788.7
292_1
71 years, male
1785.0
316_1
62 years, male
1769.9
404_1
82 years, female
1768.8
518_1
75 years, female
1694.3
517_1
88 years, male
1681.2
318_1
68 years, male
1666.0
109_1
81 years, female
1665.0
415_1
77 years, female
1607.1
18_1
88 years, male
1530.5
254_1
77 years, female
1509.8
351_1
91 years, male
1507.2
396_1
62 years, male
1486.0
350_1
84 years, female
1479.9
17_1
71 years, male
1476.6
466_1
57 years, female
1420.3
324_1
76 years, male
1414.8
32_1
67 years, male
1375.4
375_1
74 years, female
1374.9
348_1
84 years, male
1367.5
447_1
81 years, male
1365.5
353_1
82 years, female
1362.8
2_1
77 years, female
1360.8
499_1
55 years, female
1334.3
384_1
83 years, male
1334.1
320_1
89 years, female
1327.4
293_1
68 years, female
1309.7
321_1
62 years, female
1294.7
81_1
67 years, male
1289.2
162_1
79 years, female
1289.2
120_1
70 years, female
1250.0
291_1
76 years, male
1239.9
142_1
61 years, female
1225.7
315_1
62 years, female
1202.6
379_1
60 years, male
1193.3
295_1
61 years, female
1091.8
288_1
66 years, female
1074.7
317_1
60 years, male
1037.3
452_1
88 years, female
1001.8
149_1
88 years, male
997.1
117_1
61 years, male
982.0
264_1
73 years, female
971.4
145_1
84 years, male
959.7
99_1
64 years, male
958.8
35_1
74 years, female
932.4
43_1
64 years, female
923.1
137_1
83 years, male
919.4
4_1
88 years, female
916.0
506_1
65 years, male
880.2
347_1
72 years, male
856.1
313_1
79 years, female
829.7
311_1
78 years, male
829.0
322_1
76 years, male
828.6
308_1
70 years, female
828.0
413_1
59 years, female
811.6
237_1
82 years, male
776.5
139_1
64 years, female
769.2
314_1
67 years, male
746.0
173_1
67 years, male
726.2
218_1
71 years, female
674.5
495_1
57 years, female
654.1
501_1
88 years, male
587.6
307_1
66 years, female
568.3
42_1
85 years, male
549.0
119_1
70 years, female
547.7
490_1
67 years, female
519.1
89_1
63 years, male
487.2
41_1
94 years, female
415.6
491_1
89 years, female
275.8
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.