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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.7 nTPM
HPA:92.7 nTPM
GTEx:74.0 nTPM
FANTOM5:49.4 Scaled Tags Per Million
Pig:22.8 nTPM
Mouse:28.2 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 92.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 88.1
2586 Male, age 75, left hemisphere 98.8
2019 Male, age 18, unknown 91.2
1827 Male, age 72, unknown 90.7
2828 Female, age 72, unknown 87.9
2411 Female, age 72, unknown 87.0
1830 Male, age 51, unknown 85.6
1870 Female, age 42, unknown 85.6
2219 Male, age 76, both hemispheres 85.6
2666 Male, age 74, left hemisphere 84.3
1833 Male, age 53, unknown 84.0
Dorsal raphe nucleus
nTPM: 86.3
2298 Female, age 72, unknown 91.2
2047 Male, age 72, unknown 86.8
2750 Male, age 76, both hemispheres 86.6
1828 Male, age 53, unknown 83.9
2016 Female, age 72, unknown 83.1
Inferior colliculus
nTPM: 88.7
2097 Female, age 72, unknown 92.5
1848 Female, age 42, unknown 88.4
2849 Male, age 72, unknown 87.1
1890 Male, age 53, unknown 86.8
Median raphe nucleus
nTPM: 89.8
2220 Male, age 76, midline 89.8
Pedunculopontine tegmental nucleus
nTPM: 87.4
2334 Male, age 80, both hemispheres 88.2
1921 Female, age 85, both hemispheres 87.5
2338 Male, age 61, both hemispheres 86.6
Periaquaductal grey, anterior
nTPM: 90.3
1795 Male, age 51, unknown 95.7
2502 Female, age 75, unknown 90.3
1947 Male, age 18, unknown 84.9
Periaquaductal grey, dorsal
nTPM: 85.8
1840 Male, age 53, unknown 87.3
2850 Male, age 76, both hemispheres 86.5
2464 Female, age 72, unknown 84.8
1831 Male, age 72, unknown 84.7
Periaquaductal grey, lateral
nTPM: 87.9
2272 Male, age 74, both hemispheres 89.1
2053 Male, age 18, unknown 87.7
2140 Male, age 76, both hemispheres 86.8
Pretectal area
nTPM: 92.7
1816 Male, age 51, unknown 101.9
2007 Male, age 72, unknown 99.8
1944 Female, age 72, unknown 97.7
1817 Female, age 42, unknown 96.8
1815 Male, age 53, unknown 95.1
2667 Female, age 75, unknown 91.3
2273 Male, age 74, both hemispheres 91.0
2224 Female, age 72, unknown 87.8
2825 Male, age 18, unknown 87.3
2407 Male, age 75, both hemispheres 86.8
2316 Male, age 76, right hemisphere 83.7
Red nucleus
nTPM: 87.0
2785 Male, age 18, unknown 96.4
2725 Female, age 75, unknown 89.3
2503 Female, age 72, unknown 88.3
2584 Male, age 75, left hemisphere 87.7
2588 Male, age 74, left hemisphere 87.3
2227 Male, age 72, unknown 86.3
2769 Male, age 72, unknown 86.2
1954 Female, age 42, unknown 85.1
1904 Male, age 53, unknown 85.0
1821 Female, age 72, unknown 84.8
2823 Male, age 76, right hemisphere 84.6
1865 Male, age 51, unknown 82.4
Substantia nigra
nTPM: 86.9
1889 Female, age 72, unknown 92.8
1941 Male, age 53, unknown 92.7
2583 Male, age 75, right hemisphere 88.6
2665 Male, age 74, both hemispheres 87.1
1916 Female, age 42, unknown 86.9
1851 Male, age 51, unknown 86.5
2590 Female, age 75, unknown 86.2
2409 Female, age 72, unknown 85.2
2241 Male, age 72, unknown 81.9
2699 Male, age 18, unknown 81.4
Superior colliculus
nTPM: 90.5
2261 Male, age 18, unknown 95.7
1796 Male, age 53, unknown 95.3
2087 Female, age 72, unknown 95.3
1995 Male, age 72, unknown 90.5
2664 Male, age 75, both hemispheres 90.5
2587 Male, age 74, left hemisphere 90.0
1913 Female, age 42, unknown 88.6
2668 Female, age 75, unknown 88.2
1839 Male, age 51, unknown 87.0
1895 Male, age 76, right hemisphere 83.9
Ventral tegmental area
nTPM: 86.7
1915 Female, age 42, unknown 88.8
2218 Male, age 76, both hemispheres 88.0
2223 Female, age 72, unknown 87.7
2410 Female, age 72, unknown 86.8
1942 Male, age 51, unknown 85.5
2021 Male, age 53, unknown 83.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.0
Samples: 139

Max nTPM: 174.8
Min nTPM: 30.7
Std nTPM: 21.7
Median nTPM: 69.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 174.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 132.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 128.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 123.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 122.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 120.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 113.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 112.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 112.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 109.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 107.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 49.4
FF:10158-103A5 76 years, female 49.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.8
Pig sample Sample description nTPM
Midbrain
nTPM: 21.1
Samples: 4

Max nTPM: 31.2
Min nTPM: 14.1
Sample A Female 14.1
Sample B Female 18.5
Sample C Male 31.2
Sample D Male 20.6
Periaqueductal gray
nTPM: 15.6
Samples: 3

Max nTPM: 20.8
Min nTPM: 12.9
Sample B Female 13.2
Sample C Male 20.8
Sample D Male 12.9
Substantia nigra
nTPM: 22.0
Samples: 4

Max nTPM: 32.1
Min nTPM: 9.6
Sample A Female 32.1
Sample B Female 17.0
Sample C Male 29.2
Sample D Male 9.6
Superior colliculi
nTPM: 22.8
Samples: 4

Max nTPM: 27.6
Min nTPM: 18.0
Sample A Female 26.0
Sample B Female 18.0
Sample C Male 27.6
Sample D Male 19.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 28.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 30.2
Min nTPM: 23.6
Sample A Male 29.6
Sample B Male 29.3
Sample C Female 23.6
Sample D Female 30.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74581002 Antisense, RP_060215_02_D01, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.