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SLC6A8
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.4 nTPM
HPA:99.4 nTPM
GTEx:74.6 nTPM
FANTOM5:229.2 Scaled Tags Per Million
Mouse:40.1 nTPM
Allen mouse:1.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 99.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 61.4
1781 Male, age 74, unknown 68.5
2289 Male, age 61, right hemisphere 67.2
2288 Male, age 75, left hemisphere 67.0
2846 Female, age 79, unknown 63.8
2290 Female, age 72, unknown 62.9
1854 Male, age 80, left hemisphere 55.5
1857 Female, age 85, left hemisphere 53.8
2481 Female, age 94, left hemisphere 52.8
Claustrum
nTPM: 74.1
2292 Female, age 85, both hemispheres 90.8
2568 Male, age 61, both hemispheres 81.1
2491 Male, age 75, both hemispheres 74.6
1956 Male, age 74, unknown 73.2
2198 Male, age 80, both hemispheres 72.8
2645 Female, age 72, unknown 71.6
2392 Female, age 94, both hemispheres 68.4
2284 Female, age 91, both hemispheres 68.2
2196 Female, age 79, unknown 66.0
Globus pallidus, externus
nTPM: 96.2
2567 Female, age 72, unknown 116.8
1996 Male, age 80, right hemisphere 113.7
2646 Male, age 61, right hemisphere 91.0
2772 Female, age 79, unknown 85.2
2395 Male, age 75, both hemispheres 74.2
Globus pallidus, internus
nTPM: 99.4
2111 Female, age 85, right hemisphere 126.2
2778 Female, age 91, both hemispheres 117.2
2566 Female, age 72, unknown 100.9
2037 Male, age 80, right hemisphere 97.1
2287 Male, age 75, right hemisphere 93.7
1818 Male, age 74, unknown 89.9
2483 Female, age 94, right hemisphere 70.8
Nucleus accumbens
nTPM: 62.1
2732 Male, age 80, right hemisphere 72.1
2824 Male, age 61, right hemisphere 67.0
1783 Male, age 74, unknown 64.4
2286 Male, age 75, left hemisphere 63.9
1806 Female, age 85, left hemisphere 62.8
2391 Female, age 94, left hemisphere 61.4
2698 Female, age 72, unknown 61.4
1856 Female, age 91, right hemisphere 44.2
Nucleus basalis of Meynert
nTPM: 67.5
2569 Male, age 61, both hemispheres 91.8
2484 Female, age 94, left hemisphere 65.2
2393 Male, age 80, right hemisphere 58.6
2821 Male, age 75, both hemispheres 54.2
Nucleus of the diagonal band
nTPM: 52.4
2029 Male, age 61, right hemisphere 66.9
1812 Female, age 91, both hemispheres 52.5
1979 Male, age 74, unknown 51.4
2775 Male, age 80, right hemisphere 47.6
2195 Female, age 85, both hemispheres 43.5
Olfactory tubercle
nTPM: 54.0
2487 Female, age 94, left hemisphere 58.6
2856 Male, age 75, right hemisphere 55.8
1846 Male, age 80, right hemisphere 51.5
1998 Female, age 91, both hemispheres 50.2
Putamen
nTPM: 68.4
2489 Female, age 72, unknown 82.5
1829 Male, age 74, unknown 82.2
2647 Male, age 75, left hemisphere 80.1
2466 Female, age 79, unknown 70.3
1937 Female, age 91, right hemisphere 59.4
2482 Female, age 94, left hemisphere 58.1
1838 Male, age 80, right hemisphere 46.2
Septal nuclei
nTPM: 55.7
2394 Male, age 61, left hemisphere 69.4
2059 Female, age 85, both hemispheres 56.8
2031 Female, age 72, unknown 56.2
2199 Male, age 80, right hemisphere 54.8
2629 Female, age 94, right hemisphere 52.4
1960 Male, age 74, unknown 51.7
2009 Female, age 91, both hemispheres 48.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 74.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 65.2
Samples: 246

Max nTPM: 112.5
Min nTPM: 29.2
Std nTPM: 12.9
Median nTPM: 63.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 112.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 109.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 103.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 99.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 97.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 97.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 94.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 92.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 92.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 91.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 91.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 55.3
Samples: 246

Max nTPM: 114.2
Min nTPM: 23.7
Std nTPM: 12.6
Median nTPM: 53.6
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 114.2
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 111.5
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 107.7
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 98.1
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 88.9
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 87.6
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 84.8
GTEX-RU72-0011-R6A-SM-2TF71 50-59 years, female 83.3
GTEX-14C5O-0011-R6a-SM-5YYB6 60-69 years, male 79.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 78.8
GTEX-1IKK5-0011-R6b-SM-A9SLY 60-69 years, male 78.7
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Brain - Putamen (basal ganglia)
Average nTPM: 74.6
Samples: 205

Max nTPM: 138.5
Min nTPM: 37.5
Std nTPM: 17.2
Median nTPM: 71.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 138.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 138.0
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 125.8
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 123.1
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 115.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 113.0
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 110.4
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 110.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 108.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 107.0
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 106.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 229.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 118.6
FF:10164-103B2 76 years, female 118.6
Globus pallidus
Scaled Tags Per Million: 229.2
FF:10161-103A8 76 years, female 278.4
FF:10175-103C4 60 years, female 179.9
Nucleus accumbens
Scaled Tags Per Million: 106.5
FF:10037-101F1 23-56 years, mixed 106.5
Putamen
Scaled Tags Per Million: 135.8
FF:10176-103C5 60 years, female 135.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 40.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 40.1
Samples: 4

Max nTPM: 43.8
Min nTPM: 36.6
Sample A Male 43.8
Sample B Male 38.7
Sample C Female 41.4
Sample D Female 36.6
Septum
nTPM: 28.7
Samples: 4

Max nTPM: 31.5
Min nTPM: 26.7
Sample A Male 27.3
Sample B Male 26.7
Sample C Female 29.1
Sample D Female 31.5
Ventral forebrain
nTPM: 38.1
Samples: 4

Max nTPM: 43.8
Min nTPM: 32.3
Sample A Male 38.3
Sample B Male 38.1
Sample C Female 32.3
Sample D Female 43.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.8
69874030 Antisense, RP_050512_02_E06, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 1.0
69874030 Antisense, RP_050512_02_E06, Mouse strain C57BL/6J (56 days, male) 1.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.