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LRP3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.2 nTPM
HPA:47.2 nTPM
GTEx:86.7 nTPM
FANTOM5:81.3 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:17.9 nTPM
Allen mouse:3.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.0
2290 Female, age 72, unknown 61.5
2846 Female, age 79, unknown 51.6
1857 Female, age 85, left hemisphere 45.1
2289 Male, age 61, right hemisphere 40.6
1781 Male, age 74, unknown 40.0
1854 Male, age 80, left hemisphere 39.9
2288 Male, age 75, left hemisphere 35.1
2481 Female, age 94, left hemisphere 30.3
Claustrum
nTPM: 30.6
2645 Female, age 72, unknown 44.0
2284 Female, age 91, both hemispheres 40.3
2568 Male, age 61, both hemispheres 38.1
2198 Male, age 80, both hemispheres 34.2
2491 Male, age 75, both hemispheres 32.5
2196 Female, age 79, unknown 25.0
1956 Male, age 74, unknown 24.1
2392 Female, age 94, both hemispheres 20.9
2292 Female, age 85, both hemispheres 16.3
Globus pallidus, externus
nTPM: 17.9
2567 Female, age 72, unknown 23.5
2772 Female, age 79, unknown 20.0
2646 Male, age 61, right hemisphere 18.5
1996 Male, age 80, right hemisphere 17.4
2395 Male, age 75, both hemispheres 10.3
Globus pallidus, internus
nTPM: 13.8
2483 Female, age 94, right hemisphere 27.7
1818 Male, age 74, unknown 17.4
2566 Female, age 72, unknown 15.2
2037 Male, age 80, right hemisphere 12.6
2287 Male, age 75, right hemisphere 11.7
2111 Female, age 85, right hemisphere 7.3
2778 Female, age 91, both hemispheres 5.2
Nucleus accumbens
nTPM: 35.0
1783 Male, age 74, unknown 54.4
1856 Female, age 91, right hemisphere 45.1
1806 Female, age 85, left hemisphere 42.9
2824 Male, age 61, right hemisphere 42.2
2286 Male, age 75, left hemisphere 32.6
2698 Female, age 72, unknown 27.0
2732 Male, age 80, right hemisphere 19.7
2391 Female, age 94, left hemisphere 16.6
Nucleus basalis of Meynert
nTPM: 29.7
2484 Female, age 94, left hemisphere 34.9
2393 Male, age 80, right hemisphere 31.6
2569 Male, age 61, both hemispheres 29.0
2821 Male, age 75, both hemispheres 23.3
Nucleus of the diagonal band
nTPM: 29.1
2029 Male, age 61, right hemisphere 35.2
2775 Male, age 80, right hemisphere 30.5
2195 Female, age 85, both hemispheres 29.6
1812 Female, age 91, both hemispheres 27.8
1979 Male, age 74, unknown 22.4
Olfactory tubercle
nTPM: 33.2
2856 Male, age 75, right hemisphere 38.0
1998 Female, age 91, both hemispheres 34.7
2487 Female, age 94, left hemisphere 33.2
1846 Male, age 80, right hemisphere 26.8
Putamen
nTPM: 47.2
2489 Female, age 72, unknown 60.3
1829 Male, age 74, unknown 51.8
2647 Male, age 75, left hemisphere 50.5
2466 Female, age 79, unknown 49.3
1838 Male, age 80, right hemisphere 46.6
1937 Female, age 91, right hemisphere 43.5
2482 Female, age 94, left hemisphere 28.1
Septal nuclei
nTPM: 27.5
1960 Male, age 74, unknown 33.9
2059 Female, age 85, both hemispheres 31.9
2031 Female, age 72, unknown 29.7
2629 Female, age 94, right hemisphere 27.7
2009 Female, age 91, both hemispheres 25.4
2394 Male, age 61, left hemisphere 24.4
2199 Male, age 80, right hemisphere 19.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 86.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 86.7
Samples: 246

Max nTPM: 184.2
Min nTPM: 20.9
Std nTPM: 31.0
Median nTPM: 82.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 184.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 180.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 166.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 159.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 158.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 155.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 152.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 150.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 150.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 149.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 149.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 85.6
Samples: 246

Max nTPM: 180.3
Min nTPM: 11.5
Std nTPM: 28.2
Median nTPM: 84.3
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 180.3
GTEX-11NV4-0011-R6a-SM-57WD5 60-69 years, male 165.7
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 164.6
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 159.3
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 153.8
GTEX-1MJK2-0011-R6a-SM-EXUS3 50-59 years, male 152.3
GTEX-ZE9C-0011-R6a-SM-4WWCW 60-69 years, male 150.9
GTEX-1I1GR-0011-R6a-SM-CMKHI 60-69 years, male 143.7
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 141.7
GTEX-12ZZZ-0011-R6b-SM-5EQ5B 60-69 years, male 141.1
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 140.7
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Brain - Putamen (basal ganglia)
Average nTPM: 85.0
Samples: 205

Max nTPM: 179.1
Min nTPM: 23.7
Std nTPM: 30.1
Median nTPM: 79.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 179.1
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 170.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 167.2
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 162.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 157.0
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 155.5
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 151.8
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 150.0
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 144.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 144.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 143.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 81.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 62.5
FF:10164-103B2 76 years, female 62.5
Globus pallidus
Scaled Tags Per Million: 41.7
FF:10175-103C4 60 years, female 58.4
FF:10161-103A8 76 years, female 25.1
Nucleus accumbens
Scaled Tags Per Million: 81.3
FF:10037-101F1 23-56 years, mixed 81.3
Putamen
Scaled Tags Per Million: 73.2
FF:10176-103C5 60 years, female 73.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 23.0
Pig sample Sample description nTPM
Caudate
nTPM: 23.0
Samples: 4

Max nTPM: 30.7
Min nTPM: 16.4
Sample A Female 16.4
Sample B Female 23.3
Sample C Male 30.7
Sample D Male 21.5
Putamen
nTPM: 22.4
Samples: 4

Max nTPM: 28.5
Min nTPM: 13.7
Sample A Female 13.7
Sample B Female 21.4
Sample C Male 28.5
Sample D Male 26.1
Septum
nTPM: 15.0
Samples: 4

Max nTPM: 18.2
Min nTPM: 11.9
Sample A Female 15.0
Sample B Female 14.9
Sample C Male 18.2
Sample D Male 11.9
Ventral pallidum
nTPM: 17.9
Samples: 4

Max nTPM: 23.4
Min nTPM: 14.4
Sample A Female 15.3
Sample B Female 18.3
Sample C Male 23.4
Sample D Male 14.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.6
Samples: 4

Max nTPM: 17.3
Min nTPM: 9.7
Sample A Male 13.0
Sample B Male 17.3
Sample C Female 9.7
Sample D Female 10.5
Septum
nTPM: 17.9
Samples: 4

Max nTPM: 19.3
Min nTPM: 16.0
Sample A Male 19.3
Sample B Male 18.1
Sample C Female 18.3
Sample D Female 16.0
Ventral forebrain
nTPM: 16.8
Samples: 4

Max nTPM: 19.1
Min nTPM: 14.4
Sample A Male 19.1
Sample B Male 14.7
Sample C Female 18.9
Sample D Female 14.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
71022633 Antisense, RP_050713_04_H03, Mouse strain C57BL/6J (56 days, male) 2.5
Pallidum
Expression energy: 3.0
71022633 Antisense, RP_050713_04_H03, Mouse strain C57BL/6J (56 days, male) 3.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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